YRC Public Data Repository - Protein Structure Prediction

Protein:	mrps17
Organism:	Schizosaccharomyces pombe
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps17.

Description	E-value	Query Range	Subject Range
gi\|12847180 - gi\|12847180\|dbj\|BAB27467.1\| unnamed protein product [Mus musculus]	121.0	[0..3]	[87..64]
gi\|13516490, gi\|... - gi\|71895103\|ref\|NP_001026004.1\| ribosomal protein S11 [Gallus gallus], gi\|13516490\|dbj\|BAB40319.1\| r...	119.0	[0..3]	[87..71]
gi\|52346138, gi\|... - gi\|89269536\|emb\|CAJ82415.1\| ribosomal protein S11 [Xenopus tropicalis], gi\|52346138\|ref\|NP_001005113...	118.0	[0..3]	[87..71]
gi\|60653355 - gi\|60653355\|gb\|AAX29372.1\| ribosomal protein S11 [synthetic construct]	118.0	[0..3]	[87..71]
gi\|32450493, gi\|... - gi\|32450493\|gb\|AAH53813.1\| Rps11 protein [Xenopus laevis], gi\|148228908\|ref\|NP_001080676.1\| ribosoma...	117.0	[0..3]	[87..71]
gi\|46096947, gi\|... - gi\|71005596\|ref\|XP_757464.1\| hypothetical protein UM01317.1 [Ustilago maydis 521], ref\|XP_398932.1\| ...	117.0	[0..3]	[89..192]
gi\|49619071 - gi\|49619071\|gb\|AAT68120.1\| 40S ribosomal protein s11 [Danio rerio]	117.0	[0..3]	[87..72]
tr\|G3I004\|G3I004... - 40S ribosomal protein S11 OS=Cricetulus griseus GN=I79_016673 PE=3 SV=1 tr\|M3WAZ1\|M3WAZ1... - Ribosomal protein S11 OS=Felis catus GN=RPS11 PE=3 SV=1 RS11_MOUSE - 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=1 SV=3 tr\|G1TRM4\|G1TRM4... - pep:novel chromosome:oryCun2:2:132090106:132090582:1 gene:ENSOCUG00000027435 transcript:ENSOCUT00000... ENSCJAT00000000126 - null CCDS12769.1_1 - null gi\|114678487, gi... - gi\|55624058\|ref\|XP_517681.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146784... gi\|109125514, gi... - gi\|109125516\|ref\|XP_001115152.1\| PREDICTED: similar to ribosomal protein S11 isoform 2 [Macaca mulat... RPS11 - ribosomal protein S11 RS11_MACFA - 40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3 RS11_BOVIN - 40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3 gi\|187609269, gi... - gi\|73947970\|ref\|XP_533619.2\| PREDICTED: similar to ribosomal protein S11 [Canis familiaris], gi\|1876... gi\|124000091, gi... - gi\|60656399\|gb\|AAX32763.1\| ribosomal protein S11 [synthetic construct], gi\|124000091\|gb\|ABM87554.1\| ... RS11_RAT - 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3	117.0	[0..3]	[87..71]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNYVGIVI SRAMPKTAKV RVAKEKFHPV VKKYVTQYQN YMVQDDLNCN VGDAVTIQPC  60
   61 RPRSATKRFE IIKILSTANR MSPASEISKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	2gy9Q
Description:	No description for 2gy9Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
nucleic acid binding	2.69275272183315	bayes_pls_golite062009
DNA binding	1.97161900822354	bayes_pls_golite062009
binding	1.81248034004657	bayes_pls_golite062009
RNA binding	1.76502371106766	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
structure-specific DNA binding	0.83151863389272	bayes_pls_golite062009
single-stranded DNA binding	0.72238927168323	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
transcription regulator activity	0.157816897728538	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
ribonuclease activity	0.0760793505650201	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: