YRC Public Data Repository - Protein Structure Prediction

Protein:	gpi2
Organism:	Schizosaccharomyces pombe
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi2.

Description	E-value	Query Range	Subject Range
gi\|74217526 - gi\|74217526\|dbj\|BAE33529.1\| unnamed protein product [Mus musculus]	343.0	[0..27]	[316..5]
gi\|83773298 - gi\|83773298\|dbj\|BAE63425.1\| unnamed protein product [Aspergillus oryzae] gi\|169780188 - gi\|169780188\|ref\|XP_001824558.1\| hypothetical protein [Aspergillus oryzae RIB40]	342.0	[0..7]	[319..8]
PIGC_RAT - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=...	340.0	[0..28]	[316..6]
gi\|114565452, gi... - gi\|114565458\|ref\|XP_001147637.1\| PREDICTED: similar to phosphatidylinositol-glycan-class C (PIG-C) i...	339.0	[0..28]	[316..6]
PIGC - phosphatidylinositol glycan anchor biosynthesis, class C gi\|61361835, gi\|... - gi\|61361840\|gb\|AAX42112.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|61361835\|gb...	339.0	[0..28]	[316..6]
gi\|30584777, gi\|... - gi\|60653763\|gb\|AAX29575.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|60653761\|gb...	339.0	[0..28]	[316..6]
gi\|109019529, gi... - gi\|109019529\|ref\|XP_001100645.1\| PREDICTED: phosphatidylinositol glycan, class C isoform 3 [Macaca m... CCDS1302.1_1 - null	337.0	[0..28]	[316..6]
PIGC_BOVIN - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1	337.0	[0..28]	[316..6]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEVCAAPAP KKMVAKSLVL NTFRKASVKE VVELKKPWKK VLWRKQDYPD NFIDESFLNG  60
   61 LQRNVNIQVT DFWSLVADSL PVSQHLSSVV IFASVFVSIY RNQLSCALVG FVSNVSAVAA 120
  121 FILWDFVLRK PCNNRTFPNY MG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.663	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.537	N/A	N/A	a.156.1	S13-like H2TH domain
View	Download	0.522	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.414	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.321	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains

Predicted Domain #2

Region A:
Residues: [143-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVKSCILIVL TLAGLSPILM SLTKSTSPDS VWAIAVWLFL ANVFFHEYTT ETIRPHVRLH  60
   61 NSLSTNAALS ASVVLASRLE KSINVFFFIL FAVHWFALFP IFRKYIHVFS FYADMLMTLV 120
  121 LIISAYIALN AVASVVIAFV FLSLIFFISF ICPIWFIKLQ RFKNEIHGPW DIALPKLGPS 180
  181 KG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits