YRC Public Data Repository - Protein Structure Prediction

Protein:	rml2
Organism:	Schizosaccharomyces pombe
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rml2.

Description	E-value	Query Range	Subject Range
RL2_CARHZ - 50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	371.0	[0..9]	[312..1]
gi\|196196716, gi... - gi\|196253846\|ref\|ZP_03152451.1\| ribosomal protein L2 [Clostridium thermocellum DSM 4150], gi\|1961967... RL2_CLOTH - 50S ribosomal protein L2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	367.0	[0..9]	[312..1]
RL2_THEP3 - 50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE... gi\|242230648, gi... - gi\|242257804\|ref\|ZP_04802654.1\| ribosomal protein L2 [Thermoanaerobacter sp. X513], gi\|242230648\|gb\|... RL2_THEPX - 50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1 gi\|241904338, gi... - gi\|241904338\|ref\|ZP_04789040.1\| ribosomal protein L2 [Thermoanaerobacter brockii subsp. finnii Ako-1...	366.0	[0..9]	[312..1]
RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL2_BACHD - 50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1	363.0	[0..9]	[313..1]
RL2_MOOTA - 50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1	363.0	[0..9]	[313..1]
RL2_BACSK - 50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1	362.0	[0..9]	[313..1]
RL2_PELTS - 50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=r...	360.0	[0..9]	[311..1]
RL2_BACAC - 50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1 gi\|228912852, gi... - gi\|228912852\|ref\|ZP_04076499.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar pulsiensis ... RL2_BACC3 - 50S ribosomal protein L2 OS=Bacillus cereus (strain 03BB102) GN=rplB PE=3 SV=1 gi\|228943919, gi... - gi\|228943919\|ref\|ZP_04106304.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar monterrey B... gi\|228776358, gi... - gi\|228983368\|ref\|ZP_04143581.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar tochigiensi... gi\|228834288, gi... - gi\|228925366\|ref\|ZP_04088462.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar pondicherie... RL2_BACHK - 50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1 gi\|228828043, gi... - gi\|228931615\|ref\|ZP_04094521.1\| 50S ribosomal protein L2 [Bacillus thuringiensis serovar andalousien... gi\|229136959, gi... - gi\|229136959\|ref\|ZP_04265586.1\| 50S ribosomal protein L2 [Bacillus cereus BDRD-ST26], gi\|228646497\|g... gi\|228629572, gi... - gi\|229153891\|ref\|ZP_04282021.1\| 50S ribosomal protein L2 [Bacillus cereus ATCC 4342], gi\|228629572\|g... gi\|228694083, gi... - gi\|229089244\|ref\|ZP_04220525.1\| 50S ribosomal protein L2 [Bacillus cereus Rock3-42], gi\|228694083\|gb... gi\|229119775, gi... - gi\|229119775\|ref\|ZP_04249036.1\| 50S ribosomal protein L2 [Bacillus cereus 95/8201], gi\|228663676\|gb\|... RL2_BACAA - 50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1 gi\|254720835 - gi\|254720835\|ref\|ZP_05182627.1\| 50S ribosomal protein L2 [Bacillus anthracis str. A1055] gi\|228600962, gi... - gi\|229182507\|ref\|ZP_04309758.1\| 50S ribosomal protein L2 [Bacillus cereus BGSC 6E1], gi\|228600962\|gb... gi\|229194503, gi... - gi\|229194503\|ref\|ZP_04321306.1\| 50S ribosomal protein L2 [Bacillus cereus m1293], gi\|228588969\|gb\|EE... gi\|254756768 - gi\|254756768\|ref\|ZP_05208797.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Australia 94] gi\|254733586 - gi\|254733586\|ref\|ZP_05191306.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Western North Amer... gi\|254751225 - gi\|254751225\|ref\|ZP_05203263.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Vollum] RL2_BACHK - 50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplB PE=3 SV=1 RL2_BACCZ - 50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1 gi\|47500517, gi\|... - gi\|47525369\|ref\|YP_016718.1\| 50S ribosomal protein L2 [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|49183147, gi\|... - gi\|49183147\|ref\|YP_026399.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Sterne], gi\|49177074\|... gi\|30260304, gi\|... - gi\|30260304\|ref\|NP_842681.1\| 50S ribosomal protein L2 [Bacillus anthracis str. Ames], gi\|30253625\|gb... RL2_BACC1 - 50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplB PE=3 SV=1 RL2_BACAH - 50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1 RL2_BACC0 - 50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB PE=3 SV=1 RL2_BACC7 - 50S ribosomal protein L2 OS=Bacillus cereus (strain AH187) GN=rplB PE=3 SV=1 RL2_BACAN - 50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1	360.0	[0..9]	[313..1]
RL2_GEOSE - 50S ribosomal protein L2 OS=Geobacillus stearothermophilus GN=rplB PE=1 SV=2	359.0	[0..9]	[313..1]
RL2_GEOKA - 50S ribosomal protein L2 OS=Geobacillus kaustophilus (strain HTA426) GN=rplB PE=3 SV=1 gi\|221089325, gi... - gi\|221089325\|ref\|ZP_03558845.1\| ribosomal protein L2 [Geobacillus sp. Y412MC61], gi\|220706751\|gb\|EED... RL2_GEOKA - 50S ribosomal protein L2 OS=Geobacillus kaustophilus GN=rplB PE=3 SV=1 gi\|229499934, gi... - gi\|229499934\|ref\|ZP_04393611.1\| ribosomal protein L2 [Geobacillus sp. Y412MC52], gi\|229329213\|gb\|EEN...	359.0	[0..9]	[313..1]

Back

Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRPKTKFE IKTYKPISPG LRHLKRPVSD YLWKGKPFRP LTVAKRKKGG RNETGRITVR  60
   61 HQGGGHKQRI RLVDFERKVP GVHRVIRIEY DPGRSGHIAL VEKLNSETAN KSYILACDGL 120
  121 REGDTVESFR SLLKTGSNGE PVEMDPVLAA EIEDGTFAAK NLKPGNCFPL RLIPIGTVIH 180
  181 AIGVNPNQKA KLCRSAGSSA RIIAFDGKYA IVRLQSGEER KILDTSFATI GVVSNIYWQH 240
  241 RQLGKAGRSR WLGIRPTVRG TAMNPCDHPH GGGGGKSIGN KPSQSPWGVL AKGGYKTRRG 300
  301 KNVNKLLVRD RPRGKEKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.522879
Match:	1vsaB
Description:	No description for 1vsaB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits