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View Structure Prediction Details

Protein: mrpl37
Organism: Schizosaccharomyces pombe
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl37.

Description E-value Query
Range
Subject
Range
MRPL54 - mitochondrial ribosomal protein L54
149.0 [0..36] [138..26]
gi|114674655 - gi|114674655|ref|XP_001135765.1| PREDICTED: mitochondrial ribosomal protein L54 [Pan troglodytes]
146.0 [0..36] [138..26]
gi|149034435, gi... - gi|27717591|ref|XP_216854.1| PREDICTED: similar to mitochondrial ribosomal protein L54 [Rattus norve...
131.0 [0..38] [138..28]
gi|46108230, gi|... - gi|46108230|ref|XP_381173.1| hypothetical protein FG00997.1 [Gibberella zeae PH-1], gi|42544452|gb|E...
127.0 [0..15] [132..4]
RM54_BOVIN - 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54 PE=1 SV=1
122.0 [0..37] [138..27]
gi|73987447 - gi|73987447|ref|XP_542170.2| PREDICTED: similar to mitochondrial ribosomal protein L54 [Canis famili...
121.0 [0..38] [138..169]
RM54_MOUSE - 39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=1 SV=1
107.0 [0..64] [138..51]
gi|94732860 - gi|94732860|emb|CAK11408.1| novel protein similar to vertebrate mitochondrial ribosomal protein L54 ...
104.0 [0..24] [138..23]
gi|29841257 - gi|29841257|gb|AAP06289.1| similar to GenBank Accession Number AE003452 CG9353 gene product in Droso...
103.0 [0..45] [137..13]
CE29591 - status:Confirmed UniProt:O17839 protein_id:CAB02987.4
101.0 [0..29] [138..1]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFIESMAPL SRAITRGISQ FSCYSNTLVL RSSRNSSSSL VKRSYVSSRV SPKKPQHNSD  60
   61 ATSSAQKVAN KTHTSSVLPG TILKGLCIKA GGVDPVARED HEYPEWLWSL LDEPAPNSKT 120
  121 ARSHARKSAI RAANFLTKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.886057
Match: PF08561.1
Description: No description for PF08561.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.340 N/A N/A c.23.6 Cobalamin (vitamin B12)-binding domain
View Download 0.336 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.267 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.267 N/A N/A d.92.1 Metalloproteases ("zincins"), catalytic domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle