YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1105.08
Organism:	Schizosaccharomyces pombe
Length:	629 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1105.08.

Description	E-value	Query Range	Subject Range
gi\|50758867 - gi\|50758867\|ref\|XP_417455.1\| PREDICTED: similar to Transmembrane 9 superfamily protein member 4 [Gal...	829.0	[0..22]	[629..162]
TMN7_ARATH - Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1	822.0	[0..26]	[629..27]
gi\|40788928 - gi\|40788928\|dbj\|BAA13385.2\| KIAA0255 [Homo sapiens]	813.0	[0..3]	[629..52]
gi\|109092414 - gi\|109092414\|ref\|XP_001108787.1\| PREDICTED: transmembrane 9 superfamily protein member 4 isoform 3 [...	811.0	[0..1]	[629..1]
gi\|55726515 - gi\|55726515\|emb\|CAH90025.1\| hypothetical protein [Pongo abelii] TM9S4_PONAB - Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	808.0	[0..1]	[629..1]
gi\|114681441 - gi\|114681441\|ref\|XP_001154899.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] TM9SF4 - transmembrane 9 superfamily protein member 4	808.0	[0..1]	[629..1]
gi\|73992152 - gi\|73992152\|ref\|XP_534381.2\| PREDICTED: similar to Transmembrane 9 superfamily protein member 4 [Can...	802.0	[0..24]	[629..21]
TM9S4_RAT - Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	802.0	[0..1]	[629..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPSIPSCS FSFVVFVSVL LQTCFSFQLT PLSPKNYPPG ASIDTTVNTI SPFIGDGRGS  60
   61 DIFNYEYYDE RFHFCRPENI AKQSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLGSVLFGDR LYNSPIEIKM LENQDCVPLC ASIIPSSDVS FIRDLISKNY VVNWNIDNLP  60
   61 VATYLEGTNS KNYSLSPGFP LGKNTEKGVI LFNHYDIVIE YHTTSSDQHR VVGAYVKPVS 120
  121 KESTLVD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [213-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNPVCSSSSN PQYLPEGADL TLVTSYSVSW KYSDTPWATR WDKYMHIESR QIRWIFIIHS  60
   61 AIIDTFLIFV VSIILYRTLN RDINKYNSAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [303-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDQEDVQEDF GWKLVHGDVF RPPRRPMLFS ILLGTGAQLL FMSSGIVLFA IFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [356-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVAPSRRGSL ATATVALFII SGFVSGYVSA LSYKLMQGML RKRNLLLTPF VVPGFMLAAA  60
   61 LFFNMVFWSK SSSSTVPFSS WLLLIFLYLL FTVPLSFVGS LIGFRSREFV PPVRTNQIPR 120
  121 QIPSHSIWLS SFPSAIIGGS IPFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [500-629]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VILIELFSIL DSLWFHPLYF MFGFSFFCFG ILVTTCIMVS IITVYFQLCS ENYNWWWRSF  60
   61 ITPGFCGIYV FIFSVFYWFF KISSSSLATA VLYFGYSLLI SVLVFFLCGS VGFFGAFLFV 120
  121 NKIYASIKID

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits