YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1709.14
Organism:	Schizosaccharomyces pombe
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1709.14.

Description	E-value	Query Range	Subject Range
NGLY1 - N-glycanase 1 gi\|123993667, gi... - gi\|123999983\|gb\|ABM87500.1\| N-glycanase 1 [synthetic construct], gi\|123993667\|gb\|ABM84435.1\| N-glyca...	418.0	[0..14]	[332..147]
NGLY1_MACFA - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Macaca fascicularis GN=NGLY1 PE=2 SV=...	415.0	[0..14]	[332..147]
gi\|109052533 - gi\|109052533\|ref\|XP_001093251.1\| PREDICTED: similar to N-glycanase 1 isoform 4 [Macaca mulatta]	413.0	[0..14]	[332..147]
NGLY1_MOUSE - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus GN=Ngly1 PE=1 SV=2	404.0	[0..15]	[332..145]
NGLY1_RAT - Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2	402.0	[0..13]	[330..143]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFHAISQRF IDMMRSKNSQ NASQPPETYP FYHEVRQMSQ HPWMYEDPEL QDYALSILPL  60
   61 DKLFQDASEL EKEGDGSWGY QDYVIQALLK WFKREFFVWV NQPPCEKCGG ETHMTGNGPP 120
  121 NEEEKWNGVR NVELYQCNVC GHNQRFPRYN RIRALLDSRK GRCGEWANCF TFLCRALGSR 180
  181 ARWIWNAEDH VWTEVYSNKQ QRWVHVDSGE ESFDEPLIYE QGWGKKMSYC LGFGIDSVRD 240
  241 VSHRYIRHPE NGLPRDRCPE SVLQQALHEI NIEFRSRLTD SERKALEEED KREKDELDGY 300
  301 MRPVSQATPT NTDLPARQTG NVEWKEKRGE AGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.39794
Match:	2f4mA
Description:	The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits