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View Structure Prediction Details

Protein: stt3
Organism: Schizosaccharomyces pombe
Length: 752 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stt3.

Description E-value Query
Range
Subject
Range
gi|73989889 - gi|73989889|ref|XP_861731.1| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
681.0 [0..6] [748..54]
STT3B - STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
gi|114585828 - gi|114585828|ref|XP_001166939.1| PREDICTED: source of immunodominant MHC-associated peptides isoform...
674.0 [0..10] [743..58]
gi|12858636 - gi|12858636|dbj|BAB31390.1| unnamed protein product [Mus musculus]
674.0 [0..10] [743..55]
gi|109052604 - gi|109052604|ref|XP_001096091.1| PREDICTED: similar to source of immunodominant MHC-associated pepti...
674.0 [0..10] [743..57]
gi|76648137, gi|... - gi|76648137|ref|XP_580609.2| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
669.0 [0..10] [743..54]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSATITSK KGVKSHQKDW KIPLKVLILI CIAVASVSSR LFSVIRYESI IHEFDPWFNF  60
   61 RASKILVEQG FYNFLNWFDE RSWYPLGRVA GGTLYPGLMV TSGIIFKVLH LLRINVNIRD 120
  121 VCVLLAPAFS GITAIATYYL ARELKSDACG LLAAAFMGIA PGYTSRSVAG SYDNEAIAIT 180
  181 LLMSTFALWI KAVKSGSSFW GACTGLLYFY MVTAWG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [217-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYVFITNMIP LHVFVLLLMG RYTSKLYIAY TTYYVIGTLA SMQVPFVGFQ PVSTSEHMSA  60
   61 LGVFGLLQLF AFYNYVKGLV SSKQFQILIR FALVCLVGLA TVVLFALSST GVIAPWTGRF 120
  121 YSLWDTNYAK IHIPIIASVS EHQPPTWSSL FFDLQFLIWL LPVGVYLCFK ELRNEHVFII 180
  181 IYSVLGTYFC GVM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [410-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRLVLTLTPC VCIAAAVAIS TLLDTYMGPE VEEDKVSEEA ASAKSKNKKG IFSILSFFTS  60
   61 GSKNIGIYSL LSRVLVISST AYFLIMFVYH SSWVTSNAYS SPTVVLSTVL NDGSLMYIDD 120
  121 FREAYDWLRR NTPYDTKVMS WWDYGYQIAG MADRITLVDN NTWNNTHIAT VGKAMSSPEE 180
  181 KAYPILRKHD VDYILIIYGG T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [611-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGYSSDDMNK FLWMIRISQG LWPDEIVERN FFTPNGEYRT DDAATPTMRE SLLYKMSYHG  60
   61 AWKLFPPNQG YDRARNQKLP SKDPQLFTIE EAFTTVHHLV RLYKVKKPDT LGRDLKQVTL 120
  121 FEEGKRKKLR RPAKTNEIPL RV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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