YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: sfc9
Organism: Schizosaccharomyces pombe
Length: 673 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfc9.

Description E-value Query
Range
Subject
Range
gi|7491755, gi|2... - pir||T40752 hypothetical protein SPBC8D2.07c - fission yeast (Schizosaccharomyces pombe), gi|225754...
1053.0 [0..130] [673..1]

Back

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDVALDFL PSSLYSCTCS CDGKLAFCDS EKVQILVPST EANTPKFMKA LAYLDDVEDE  60
   61 LPNCQMLAPN ELRLGDLTPS VISRYVVWSP TGLADNYDPL LTVLTNRHRV YFFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSRVLHQKW TCVAQMSTHL PSDPLELCRI HSVAWSPLVS LPSSSPWGVC LFALGAESGH  60
   61 VHLSIMSHSS TPFFKSFDLN CSWVVQLSFS SWNVVGDSAT CLLSCSSRNG EIRILKIAIS 120
  121 SHSDTFDTAM QELPFSLDY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [254-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPFSPLLAWS SPLANVEYLA LVYPGHLFAF RYDKSLGKFC SFLNHNLLSL CSPSGVLFGH  60
   61 NDIDTIYVYI LTHSGTLETF SLLDNSISML DSPERHVLEK FLNNHLQNYG SVSDDSIKTL 120
  121 KIHGFC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [380-673]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPYLSSAAL HFSISYPASF TYVVTAAERS YFNFIPSLFS KSVFSHMITS SLNNLCVAPS  60
   61 AGCLLEISLM NDTLKEKTDI FTMLTNSLSS FLVTDYDFFL ELKHLIDISS LSNLYLDSSL 120
  121 NAMRLLYGWS VYKQKALDAT LLNSLRYRLT LYIMLYTLSQ ISLDPSYLTS DCKAVLRNFV 180
  181 SFTYKELAEV PIAMEVANEI AKSLEVSSDF SETCPACEAT VQFNNTSLAT CDNGHVWRRC 240
  241 SVTMLLLSQK AAKYCAVCNS IVAIFNPSQT KCLLADLQNE LSICFYCGGH FLVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle