YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl33
Organism:	Schizosaccharomyces pombe
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl33.

Description	E-value	Query Range	Subject Range
RL30_PYRHO - 50S ribosomal protein L30P OS=Pyrococcus horikoshii GN=rpl30p PE=3 SV=1 RL30_PYRHO - 50S ribosomal protein L30P OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	117.0	[0..1]	[84..1]
RL30_PYRAB - 50S ribosomal protein L30P OS=Pyrococcus abyssi GN=rpl30p PE=3 SV=1 RL30_PYRAB - 50S ribosomal protein L30P OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl30p PE=3 SV=1	116.0	[0..1]	[84..1]
RL30_PYRFU - 50S ribosomal protein L30P OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN... RL30_PYRFU - 50S ribosomal protein L30P OS=Pyrococcus furiosus GN=rpl30p PE=3 SV=1	116.0	[0..1]	[84..1]
gi\|109086742 - gi\|109086742\|ref\|XP_001086568.1\| PREDICTED: similar to 60S ribosomal protein L7 [Macaca mulatta]	116.0	[0..6]	[92..346]
RL30_METTH - 50S ribosomal protein L30P OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 /... gi\|7440716 - gi\|7440716\|pir\|\|H69129 ribosomal protein L30 - Methanobacterium thermoautotrophicum (strain Delta H)	113.0	[0..4]	[86..2]
gi\|15293877 - gi\|15293877\|gb\|AAK95131.1\| ribosomal protein L7 [Ictalurus punctatus]	109.0	[0..6]	[92..106]
RL30_PYRKO - 50S ribosomal protein L30P OS=Pyrococcus kodakaraensis GN=rpl30p PE=3 SV=1 RL30_THEKO - 50S ribosomal protein L30P OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=...	109.0	[0..1]	[84..1]
gi\|28630259 - gi\|28630259\|gb\|AAN73358.1\| ribosomal protein L7 [Branchiostoma lanceolatum]	109.0	[0..2]	[92..79]
RL30_METMJ - 50S ribosomal protein L30P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3...	108.0	[0..4]	[84..2]
gi\|125591555, gi... - gi\|50928547\|ref\|XP_473801.1\| OSJNBb0015N08.13 [Oryza sativa (japonica cultivar-group)], gi\|38346913\|... gi\|125549630 - gi\|125549630\|gb\|EAY95452.1\| hypothetical protein OsI_016685 [Oryza sativa (indica cultivar-group)]	108.0	[0..6]	[92..88]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFRVRLER SAIGLSSKVR SVLHSLRLTK RHSVVYCDVN PINAGRIFKV KELVSVSTVK  60
   61 QKLAAGQEKK SLASSSGFTV IHRYNNGLKE LNNMFES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1s1iF
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits