YRC Public Data Repository - Protein Structure Prediction

Protein:	mug89
Organism:	Schizosaccharomyces pombe
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug89.

Description	E-value	Query Range	Subject Range
gi\|42547514, gi\|... - gi\|46137051\|ref\|XP_390217.1\| hypothetical protein FG10041.1 [Gibberella zeae PH-1], gi\|42547514\|gb\|E...	503.0	[0..2]	[387..6]
gi\|119196363, gi... - gi\|90307571\|gb\|EAS37202.1\| hypothetical protein CIMG_02556 [Coccidioides immitis RS], gi\|119196363\|r... gi\|240110908 - gi\|240110908\|gb\|EER29064.1\| LEM3 family / CDC50 family protein [Coccidioides posadasii C735 delta SO...	486.0	[0..2]	[389..8]
gi\|83770983 - gi\|83770983\|dbj\|BAE61116.1\| unnamed protein product [Aspergillus oryzae] gi\|238490103, gi... - gi\|238490103\|ref\|XP_002376289.1\| LEM3/CDC50 family protein [Aspergillus flavus NRRL3357], gi\|2206986... gi\|169764110 - gi\|169764110\|ref\|XP_001727955.1\| hypothetical protein [Aspergillus oryzae RIB40]	482.0	[0..11]	[389..19]
gi\|49650777 - gi\|49650777\|emb\|CAG77710.1\| YALI0F02475p [Yarrowia lipolytica] gi\|49650777, gi\|... - gi\|50554997\|ref\|XP_504907.1\| YALI0F02475p [Yarrowia lipolytica], gi\|49650777\|emb\|CAG77710.1\| unnamed...	473.0	[0..9]	[384..2]
orf19.11026, orf... - LEM3 CGDID:CAL0005904 Assembly 19, Contig19-10183 (33797, 35116) CDS, translated using codon table 1... gi\|46436500, gi\|... - gi\|68482287\|ref\|XP_714901.1\| hypothetical protein CaO19.3542 [Candida albicans SC5314], gi\|68482160\|...	470.0	[0..5]	[386..33]
gi\|70991342, gi\|... - gi\|70991342\|ref\|XP_750520.1\| LEM3/CDC50 family protein [Aspergillus fumigatus Af293], gi\|66848152\|gb... gi\|159130993 - gi\|159130993\|gb\|EDP56106.1\| LEM3/CDC50 family protein [Aspergillus fumigatus A1163]	466.0	[0..5]	[389..13]
gi\|71005300, gi\|... - gi\|71005300\|ref\|XP_757316.1\| hypothetical protein UM01169.1 [Ustilago maydis 521], ref\|XP_398784.1\| ...	462.0	[0..4]	[386..21]
gi\|55251321 - gi\|55251321\|emb\|CAH68892.1\| novel protein [Danio rerio]	456.0	[0..4]	[384..8]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEALNENVS DTASNGPVAK TRAPPNTSFR QQRIKSWQPL LTPKIVLPLF FVLGIIFGPL  60
   61 GGGLLYASSI VQELVVDYTD CETLASYDEF SAVPSKKYTA SFDQSGTIGF DKESTYWKLE 120
  121 KILDKDLDMD VNYCIIRFTV PSVLKAPIFI YYRLTNFFQN HRRYAKSVDE KQLQGVALTA 180
  181 DEVKGGNCFP LEVNEDDKPY YPCGLIANSL FNDTFSSLRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [221-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDDNSVYTFS TKNIAWASDK RRFLKTNYSP DDVAPPPNWV LRYPDGYTES NMPDLSTMEN  60
   61 LQVWMRTAGL PTFSKLAMRN DNDDIFPGTY EIKIGLFFPV KSFDGTKSLV LTTRSVLGGK 120
  121 NPFLGIAYIV VSAVCVVLGT VFTLRHFIRP RKLADHRYLN WDSEENNLAP HLSDRP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits