YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1486.08
Organism:	Schizosaccharomyces pombe
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1486.08.

Description	E-value	Query Range	Subject Range
gi\|46101582, gi\|... - gi\|71023575\|ref\|XP_762017.1\| hypothetical protein UM05870.1 [Ustilago maydis 521], ref\|XP_403485.1\| ...	136.0	[0..5]	[105..18]
COX16_NEUCR - Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 /... COX16_NEUCR - Cytochrome c oxidase assembly protein cox-16, mitochondrial OS=Neurospora crassa GN=cox-16 PE=3 SV=1	134.0	[0..6]	[103..17]
COX16_ASHGO - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / C... COX16_ASHGO - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Ashbya gossypii GN=COX16 PE=3 SV=1	134.0	[0..6]	[106..21]
COX16_GIBZE - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Gibberella zeae GN=COX16 PE=3 SV=1 COX16_GIBZE - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MY...	132.0	[0..6]	[102..18]
gi\|39970381, gi\|... - gi\|86196340\|gb\|EAQ70978.1\| hypothetical protein MGCH7_ch7g385 [Magnaporthe grisea 70-15], gi\|3997038...	131.0	[0..5]	[103..17]
COX16 - Mitochondrial inner membrane protein, required for assembly of cytochrome c oxidase gi\|190409484 - gi\|190409484\|gb\|EDV12749.1\| unnamed protein product [Saccharomyces cerevisiae RM11-1a] COX16_YEAST - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC ... gi\|151945073 - gi\|151945073\|gb\|EDN63324.1\| cytochrome C oxidase [Saccharomyces cerevisiae YJM789]	131.0	[0..6]	[104..21]
gi\|238880436 - gi\|238880436\|gb\|EEQ44074.1\| hypothetical protein CAWG_02333 [Candida albicans WO-1] COX16_CANAL - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida albicans (strain SC5314 / ATCC... COX16_CANAL - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida albicans GN=COX16 PE=3 SV=1	125.0	[0..6]	[106..22]
COX16_PHANO - Cytochrome c oxidase-assembly factor COX16, mitochondrial precursor - Phaeosphaeria nodorum (Septori... gi\|111063507 - gi\|111063507\|gb\|EAT84627.1\| hypothetical protein SNOG_08351 [Phaeosphaeria nodorum SN15]	123.0	[0..6]	[103..18]
COX16_KLULA - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585... COX16_KLULA - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Kluyveromyces lactis GN=COX16 PE=3 SV=...	120.0	[0..6]	[104..21]
COX16_CANGA - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida glabrata GN=COX16 PE=3 SV=1 COX16_CANGA - Cytochrome c oxidase assembly protein COX16, mitochondrial OS=Candida glabrata (strain ATCC 2001 / C...	118.0	[0..6]	[103..21]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFYRFKSWY RLQAKKSPFI YVGLPFLSSV LLVWSCLIPI SQVKFNRRDE QVKSLSRDAE  60
   61 LDIIKRRRKV DVNEEYYRIL LDQLNLQNEE YENKRVKRLK GEPTWEGNSS DKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.540	a.74.1	Cyclin-like
View	Download	0.334	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.313	a.74.1	Cyclin-like
View	Download	0.309	a.60.1	SAM/Pointed domain
View	Download	0.300	c.10.2	L domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits