YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4.02c
Organism:	Schizosaccharomyces pombe
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4.02c.

Description	E-value	Query Range	Subject Range
gi\|39942876, gi\|... - gi\|39942876\|ref\|XP_360975.1\| hypothetical protein MG03518.4 [Magnaporthe grisea 70-15], gb\|EAA51923....	580.0	[0..22]	[447..54]
gi\|27803046 - gi\|27803046\|emb\|CAD60749.1\| unnamed protein product [Podospora anserina]	559.0	[0..22]	[425..71]
gi\|85093922 - gi\|85093922\|ref\|XP_959788.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28921242, gi\|... - gi\|32421399\|ref\|XP_331143.1\| hypothetical protein [Neurospora crassa], gi\|28921242\|gb\|EAA30552.1\| hy...	527.0	[0..23]	[448..124]
gi\|88184712, gi\|... - gi\|88184712\|gb\|EAQ92180.1\| hypothetical protein CHGG_00415 [Chaetomium globosum CBS 148.51], gi\|1161...	510.0	[0..15]	[429..26]
gi\|40744433, gi\|... - gi\|67525161\|ref\|XP_660642.1\| hypothetical protein AN3038.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	507.0	[0..16]	[456..25]
gi\|60102676 - gi\|60102676\|gb\|AAX14027.1\| unknown [Monascus pilosus]	471.0	[0..24]	[430..64]
gi\|114196623, gi... - gi\|115384768\|ref\|XP_001208931.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	471.0	[0..16]	[429..23]
gi\|119190949, gi... - gi\|90304867\|gb\|EAS34498.1\| hypothetical protein CIMG_05522 [Coccidioides immitis RS], gi\|119190949\|r...	433.0	[0..25]	[456..60]
gi\|45190884, gi\|... - gi\|45190884\|ref\|NP_985138.1\| AER281Cp [Ashbya gossypii ATCC 10895], gi\|44983926\|gb\|AAS52962.1\| AER28... gi\|44983926 - gi\|44983926\|gb\|AAS52962.1\| AER281Cp [Ashbya gossypii ATCC 10895]	427.0	[0..22]	[367..29]
gi\|111056963, gi... - gi\|169622633\|ref\|XP_001804725.1\| hypothetical protein SNOG_14543 [Phaeosphaeria nodorum SN15], gi\|11...	418.0	[0..22]	[447..40]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNVDIGLG TYDFSKWGYI DVHKIKEVHI YDFDNVRLNP WKDRMSVKTN SLLQTLFQTP  60
   61 LPNANIWSNQ AIRILMAFNI LANGGWFFDP HVLAATGDGV EVEEKRAWEG WWNEKIVSQA 120
  121 RESIRRPDVL AVLLTGRNEG FRGIVEKIIA SKGLDFQGVV FKLQAPDGFW PQTLNFKLWF 180
  181 FNEVYRHFLY INSTRIYEDR PSHIEAFSAW LTERKKKNKN ADFEIIAVAE PPKYLKFKVE 240
  241 IALVRGMLTA HNLKAPSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [259-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLPLYKFVKN VIATVVTVPV AELHHIRNAF FNIPIAEIME SVSANSSRRN SHDSNSTIIC  60
   61 EPEYPPDTSF NSSPGRLWIV TAIGRYRDEY WTVRAEAAEG YDCEKIHEID VADIPSLYGT 120
  121 ILYVSMSTGI VKSEIGDIGA QQWKTLAPSE RWILRTNIRK ECTYDIRYKR PYVSSLKYSD 180
  181 DDLTAGRASP MTGPTKRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits