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View Structure Prediction Details

Protein: snf30
Organism: Schizosaccharomyces pombe
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for snf30.

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVSKSPPI VNSASPTGQV NPMEVEKANK LLEINRLILW KCLELQHIKT AQNSTLEQRA  60
   61 LSTELFNSYI QRLKANLAFV VSIASPRQMQ VLTPPLSCPE SLPQLEPLYK ELRQYFQIAQ 120
  121 TSTLSYPPSN G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.796 a.216.1 Description not found.
View Download 0.716 a.24.9 alpha-catenin/vinculin
View Download 0.711 a.24.9 alpha-catenin/vinculin
View Download 0.683 a.24.9 alpha-catenin/vinculin
View Download 0.670 a.24.9 alpha-catenin/vinculin
View Download 0.639 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.558 a.24.14 FAT domain of focal adhesion kinase
View Download 0.516 a.25.1 Ferritin-like
View Download 0.513 f.18.1 F1F0 ATP synthase subunit A

Predicted Domain #2
Region A:
Residues: [132-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSYANGTD LHGNTGTMQQ EEKANPSLTR SDSVSSGSYI TMQGANSLKA QQDLLNSFTG  60
   61 APSNNSHNIP DPNLSQTFSA TSMGPPNNNY SKFRTDNYLA RSSNRSGTPN IQNEQSRFFD 120
  121 SQQAQVQARA LMQRYQQGME FNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.292 c.65.1 Formyltransferase
View Download 0.268 c.65.1 Formyltransferase


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle