YRC Public Data Repository - Protein Structure Prediction

Protein:	ech-6
Organism:	Caenorhabditis elegans
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ech-6.

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	293.0	[0..34]	[288..3]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	287.0	[0..33]	[288..2]
gi\|187031458, gi... - gi\|39590764\|emb\|CAE65137.1\| Hypothetical protein CBG10003 [Caenorhabditis briggsae], gi\|187031458\|em... gi\|157774399 - gi\|157774399\|ref\|XP_001665265.1\| hypothetical protein CBG10003 [Caenorhabditis briggsae AF16]	284.0	[0..1]	[288..1]
gi\|241218800, gi... - gi\|241769557\|ref\|ZP_04766976.1\| Enoyl-CoA hydratase/isomerase [Sulfolobus solfataricus 98/2], gi\|241... gi\|25291790 - pir\|\|A90436 enoyl CoA hydratase (paaF-7) [imported] - Sulfolobus solfataricus gi\|13815932, gi\|... - gi\|15899349\|ref\|NP_343954.1\| enoyl CoA hydratase (paaF-7) [Sulfolobus solfataricus P2], gi\|13815932\|...	284.0	[0..33]	[287..8]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	278.0	[0..36]	[288..5]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	278.0	[0..37]	[288..6]
gi\|15622596, gi\|... - gi\|15921809\|ref\|NP_377478.1\| 3-hydroxybutyryl-CoA dehydratase [Sulfolobus tokodaii str. 7], gi\|15622...	278.0	[0..32]	[288..11]
gi\|70606884, gi\|... - gi\|70606884\|ref\|YP_255754.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM 639],...	276.0	[0..33]	[288..407]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	276.0	[0..37]	[288..6]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRFSSMLVR NAKLCANVNQ MQVAAFSSKA PEMIKIEKVG EKQNVALIKL NRPKALNALC  60
   61 AQLMTELADA LEVLDTDKSV GAIVITGSER AFAAGADIKE MTNNEFATTF SGSFLSNWTA 120
  121 VSDVKKPVIA AVNGFALGGG NELAMMCDII YAGEKARFGQ PEINIGTIPG AGGTQRWARA 180
  181 AGKSFAMEVC LTGNHVTAQE AKEHGIVSKI FPADQVVGEA VKLGEKIADQ SPLIVQMAKE 240
  241 AVNKAYELTL QEGLHFERRL FHATFATKDR KEGMTAFAEK RKPQWESK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	2hw5A
Description:	No description for 2hw5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits