YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-5
Organism:	Caenorhabditis elegans
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-5.

Description	E-value	Query Range	Subject Range
gi\|73951627 - gi\|73951627\|ref\|XP_534790.2\| PREDICTED: similar to prefoldin 5 isoform 1 [Canis familiaris]	152.0	[0..6]	[147..106]
gi\|7209590, gi\|9... - gi\|9910216\|ref\|NP_064415.1\| prefoldin 5 isoform 1 [Mus musculus], gi\|7209590\|dbj\|BAA92269.1\| EIG-1 [...	148.0	[0..6]	[147..43]
gi\|1731809 - gi\|1731809\|dbj\|BAA14006.1\| c-myc binding protein [Homo sapiens]	140.0	[0..6]	[147..16]
PFD5_PONPY - Prefoldin subunit 5 - Pongo pygmaeus (Orangutan) PFD5_PONAB - Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1	134.0	[0..6]	[147..3]
gi\|197246197, gi... - gi\|27665420\|ref\|XP_217061.1\| PREDICTED: similar to Prefoldin subunit 5 (C-myc-binding protein Mm-1) ...	134.0	[0..6]	[147..3]
gi\|61371542, gi\|... - gi\|61371542\|gb\|AAX43686.1\| prefoldin 5 [synthetic construct], gi\|30585355\|gb\|AAP36950.1\| Homo sapien...	134.0	[0..6]	[147..3]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEPKGVPL SELSLQQLGE LQKNCEQELN FFQESFNALK GLLTRNEKSI SALDDVKIAT  60
   61 AGHTALIPLS ESLYIRAELS DPSKHLVEIG TGYFVELDRE KAKAIFDRKK EHITKQVETV 120
  121 EGILKEKRRT RAYISDAFQT KVQSQLATMN TQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits