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View Structure Prediction Details

Protein: cee-1
Organism: Caenorhabditis elegans
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cee-1.

Description E-value Query
Range
Subject
Range
GET4 - golgi to ER traffic protein 4 homolog (S. cerevisiae)
392.0 [0..4] [318..25]

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Predicted Domain #1
Region A:
Residues: [1-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATTLSRLS EFEKEKKFYD ALQFYRTKVT RSFRLKNANE VAIPLVKHAL EFFFREKQYQ  60
   61 CAIDITTQYA ECLSKNNVDL GEEAFNILAD SVSKFANFAE IENEAGNSEP EQLLNTARCK 120
  121 CVDLAIQWTK QKATTPIEKK YGSAAFHTVL AKKLVAVDHV ELAKNHFLLS DDFKSFANFL 180
  181 HQEYESFKQK ESEPEVIIVE AVFQSLCLDR FPFAVSLFTE YVAPAKYPFT KPLLNFQHIL 240
  241 FDVIETENQP QYSELTSSYQ TELKRSLAFI GYLTRIGKLY FG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 1qqeA
Description: Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.11039613934618 bayes_pls_golite062009
protein binding 0.694924729087456 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [283-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRDNQCMSGG LGGLFSGLLG GQKEEETATS HITSRTPARQ KPAAMSQPSP FGPFGALAGA  60
   61 PAPAPVPKKI QKVEMEEDLD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle