| Protein: | die-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 645 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for die-1.
| Description | E-value | Query Range |
Subject Range |
|
|
663.0 | [0..17] | [641..383] |
|
Region A: Residues: [1-200] |
1 11 21 31 41 51
| | | | | |
1 MANAVDMQQL LMSMDPSSAN QFNMMNKGGA CVMATSGGSA SPTSSSGAPS SSSIMAETDE 60
61 KDMFMPSQLI QNGLANNQLM SMILQQQSNQ ADSNIADAGH NNSGAEKNII ELLMSGNADL 120
121 MKFATQFAQQ AKSVDQEPEE QRESSPSPPP AVSLNSTLAS MVFPTTSTAT ECSAASTTSS 180
181 VDSAPSTVIV NGHSNSQSNT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [201-344] |
1 11 21 31 41 51
| | | | | |
1 DDDDVTQQPS AKKQRTGDET PLTPTSNNQL MQSLLAQMGL SNPLHQQNQK QMKDESMMFS 60
61 GLFPQGLAGI PLMFQSPLHQ QFAGMQDFEP LSALSTPNKG SGVKRQYSSN NKNFCDICNK 120
121 EVCNKYFLRT HMLKMHGIVI DENK
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.5693324142242 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20084827450202 | bayes_pls_golite062009 |
| DNA binding | 1.11228868978256 | bayes_pls_golite062009 |
| nucleic acid binding | 1.10067326005752 | bayes_pls_golite062009 |
| transcription factor activity | 0.33874886911135 | bayes_pls_golite062009 |
| protein binding | 0.186544761618633 | bayes_pls_golite062009 |
|
Region A: Residues: [345-520] |
1 11 21 31 41 51
| | | | | |
1 TVIANIDTSI KEREGELTFR CDTCRTMFKT RNQLRQHRQD VHGVLPLSTP RNNPNKSSVP 60
61 TTPNGANNNS GPNSASMSEE KCALCDKRVS PSMMMLHMAQ DHFGAAAANG DLNQMMAILG 120
121 QRNQSTEEKM SSNLLECTDC SYKTRDPKNL DLHMERHIKM SEAKGRGDED EDVALQ
|
| Detection Method: | |
| Confidence: | 52.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [521-645] |
1 11 21 31 41 51
| | | | | |
1 LTTEAALQMV VQNQNQYDGD STAAALNLTF KNDGTKKEIE EEKATGNHER NSHTSGSISP 60
61 SGSIPEGFGK NIGEKAFPTQ SFLIKCNDDS GEFLTEFLAQ LPVRSVIDGP RQLVFNLHPA 120
121 PPTTS
|
| Detection Method: | |
| Confidence: | 16.221849 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.5693324142242 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20084827450202 | bayes_pls_golite062009 |
| DNA binding | 1.11228868978256 | bayes_pls_golite062009 |
| nucleic acid binding | 1.10067326005752 | bayes_pls_golite062009 |
| transcription factor activity | 0.33874886911135 | bayes_pls_golite062009 |
| protein binding | 0.186544761618633 | bayes_pls_golite062009 |
