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View Structure Prediction Details

Protein: flp-4
Organism: Caenorhabditis elegans
Length: 93 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-4.

Description E-value Query
Range
Subject
Range
gi|187037195, gi... - gi|39597127|emb|CAE59354.1| Hypothetical protein CBG02703 [Caenorhabditis briggsae], gi|187037195|em...
gi|157751648 - gi|157751648|ref|XP_001679536.1| Hypothetical protein CBG02703 [Caenorhabditis briggsae AF16]
141.0 [0..1] [93..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAFSSSLKT FIFSLLFATL LALTAAHPPS SGEEIAEQEE KNIASPDELI PEIVEQQNFW  60
   61 PPVHLRGLRS SNGKPTFIRF GKRASPSFIR FGK

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Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.709 d.68.7 R3H domain
View Download 0.629 d.58.35 Pseudouridine synthase
View Download 0.597 d.51.1 Eukaryotic type KH-domain (KH-domain type I)
View Download 0.547 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.517 d.68.3 SirA-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle