YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02007
Organism:	Caenorhabditis elegans
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02007.

Description	E-value	Query Range	Subject Range
gi\|109101918 - gi\|109101918\|ref\|XP_001118248.1\| PREDICTED: similar to 1,2-dihydroxy-3-keto-5-methylthiopentene diox...	245.0	[0..64]	[218..142]
gi\|114575972 - gi\|114575972\|ref\|XP_001153347.1\| PREDICTED: similar to putative protein product of HMFT1638 isoform ...	239.0	[0..64]	[218..60]
MTND3_ARATH - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1	234.0	[0..59]	[218..7]
gi\|37791221 - gi\|37791221\|gb\|AAR03591.1\| ARD-like protein [Brassica juncea]	233.0	[0..59]	[218..7]
ARD2_ORYSA - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.-.-) (Aci-reductone dioxygenase 2) (... MTND2_ORYSJ - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 ... MTND2_ORYSI - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV...	232.0	[0..59]	[218..7]
gi\|51555781 - gi\|51555781\|dbj\|BAD38646.1\| putative protein product of HMFT1638 [Homo sapiens]	232.0	[0..64]	[218..15]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLCFILLTH DVQSLVFFYN LPNLTFLPIE TFFCEFSIFF FLNLFFPFFP LFSPAFSFDF  60
   61 QLKMVQIWQM EPYPCGDPRL PHHLFPPKKI TPDELSKRTG TLYWKLDTLD QVALAKRLTT 120
  121 LKLEHSFKKE DIFTLDAETT ANFDDKIEEL FEESSVPFEQ ARMIIEGTAY YDVEDKNGQW 180
  181 VRIFCEYGDL ILIPANTCFR FTTTPHNFVK MRRFYKDEDS E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	1vr3A
Description:	Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.10919583483877	bayes_pls_golite062009
catalytic activity	0.401988496917198	bayes_pls_golite062009
protein binding	0.133891883527478	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: