YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02267
Organism:	Caenorhabditis elegans
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02267.

Description	E-value	Query Range	Subject Range
gi\|119114220, gi... - gi\|119114220\|ref\|XP_319125.3\| ENSANGP00000012431 [Anopheles gambiae str. PEST], gi\|116118312\|gb\|EAA1...	211.0	[0..2]	[232..1]
gi\|39587209, gi\|... - gi\|39587209\|emb\|CAE57677.1\| Hypothetical protein CBG00671 [Caenorhabditis briggsae], gi\|187038882\|em... gi\|157749813 - gi\|157749813\|ref\|XP_001678620.1\| Hypothetical protein CBG00671 [Caenorhabditis briggsae AF16]	211.0	[0..1]	[236..1]
mRpL10-PA - The gene mitochondrial ribosomal protein L10 is referred to in FlyBase by the symbol Dmel\mRpL10 (CG... gi\|220952988, gi... - gi\|220952988\|gb\|ACL89037.1\| mRpL10-PA [synthetic construct], gi\|220942770\|gb\|ACL83928.1\| mRpL10-PA [...	197.0	[0..2]	[239..11]
gi\|68245303, gi\|... - gi\|69260659\|ref\|ZP_00608127.1\| Ribosomal protein L10 [Magnetococcus sp. MC-1], gi\|68245303\|gb\|EAN274...	189.0	[0..69]	[237..2]
gi\|25525751 - gi\|25525751\|pir\|\|AE3345 LSU ribosomal protein L10P [imported] - Brucella melitensis (strain 16M) gi\|17982684, gi\|... - gi\|17987030\|ref\|NP_539664.1\| 50S ribosomal protein L10 [Brucella melitensis 16M], gi\|17982684\|gb\|AAL...	189.0	[0..56]	[237..18]
gi\|113875391, gi... - gi\|150396197\|ref\|YP_001326664.1\| 50S ribosomal protein L10 [Sinorhizobium medicae WSM419], gi\|150027...	184.0	[0..57]	[237..11]
RL10_ALCBS - 50S ribosomal protein L10 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	184.0	[0..65]	[238..4]
gi\|114778901, gi... - gi\|114778901\|ref\|ZP_01453698.1\| 50S ribosomal protein L10 [Mariprofundus ferrooxydans PV-1], gi\|1145...	184.0	[0..69]	[237..2]
RM10_DROPS - 39S ribosomal protein L10, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly) RM10_DROPS - 39S ribosomal protein L10, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL10 PE=3 SV...	182.0	[0..2]	[234..11]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNQSLRPLV NVQVRSVSSK YPRPTPRHFK RRLFEAALKP ELPPTVNMCI PPGLIKREHT  60
   61 GKSKEYSDVE LALSNLVRDW MVREEFRVMA VCQFLPVPGR TLWFAKNQLR SKNIEFRSYG 120
  121 NKILKKIFDK TPMSSLNTVL VGNNAILLAK DISAIKSILQ ETDKLNWIEP LVMMADGRIV 180
  181 DMVDARELAK LSSLEDLRAH TVQLLGQQVA QVTISLDTVT RHLPSLLDSH ISTNQEAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.367447002499965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: