YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02482
Organism:	Caenorhabditis elegans
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02482.

Description	E-value	Query Range	Subject Range
RFBC_SALTY - dTDP-4-dehydrorhamnose 3,5-epimerase OS=Salmonella typhimurium GN=rfbC PE=1 SV=1 lcl\|NC_016856.1_... - [gene=rfbC] [protein=dTDP-4-deoxyrhamnose 3,5 epimerase] [protein_id=YP_005238129.1] [location=compl... RFBC_SALTY, RMLC... - dTDP-4-dehydrorhamnose 3,5-epimerase OS=Salmonella typhimurium GN=rfbC PE=1 SV=1, dTDP-4-dehydrorham... RMLC_SALTY - dTDP-4-dehydrorhamnose 3,5-epimerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|581655 - gi\|581655\|emb\|CAA40118.1\| rmlC [Salmonella enterica]	268.0	[0..12]	[189..1]
gi\|124115147, gi... - gi\|153214711\|ref\|ZP_01949556.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Vibrio cholerae 1587], gi\|1241... gi\|29725987 - gi\|29725987\|gb\|AAO88920.1\| dTDP-6-deoxy-D-glucose-3,5-epimerase [Vibrio cholerae]	267.0	[0..13]	[189..1]
gi\|29136904, gi\|... - gi\|29141278\|ref\|NP_804620.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp. enteri... gi\|16761026 - gi\|16761026\|ref\|NP_456643.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Salmonella enterica subsp. enteri... gi\|25292478, gi\|... - gi\|25292478\|pir\|\|AC0767 dTDP-4-dehydrorhamnose 3,5-epimerase [imported] - Salmonella enterica subsp....	266.0	[0..12]	[189..1]
gi\|37197227, gi\|... - gi\|37678487\|ref\|NP_933096.1\| dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase [Vibrio vulnificus YJ016],...	262.0	[0..13]	[189..1]
gi\|119865668, gi... - gi\|119947064\|ref\|YP_944744.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Psychromonas ingrahamii 37], gi\|...	261.0	[0..13]	[188..1]
gi\|237704492, gi... - gi\|237704492\|ref\|ZP_04534973.1\| RmlC [Escherichia sp. 3_2_53FAA], gi\|226900858\|gb\|EEH87117.1\| RmlC [... gi\|115513358, gi... - gi\|117624234\|ref\|YP_853147.1\| putative dTDP-4-dehydrorhamnose 3,5-epimerase [Escherichia coli APEC O...	261.0	[0..13]	[190..1]
gi\|157161533, gi... - gi\|75196106\|ref\|ZP_00706176.1\| COG1898: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Es...	261.0	[0..13]	[188..1]
gi\|62955960 - gi\|62955960\|gb\|AAY23336.1\| RmlC [Shigella boydii]	260.0	[0..13]	[190..1]
gi\|81169788, gi\|... - gi\|81300907\|ref\|YP_401115.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC 7942]... gi\|56686963, gi\|... - gi\|56752004\|ref\|YP_172705.1\| dTDP-4-dehydrorhamnose 3,5-epimerase [Synechococcus elongatus PCC 6301]...	260.0	[0..13]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPTPGKRF QLEKEVIEAI PDLLVIKPKV FPDERGFFSE SYNKTEWAEK IGYTEDLQQD  60
   61 NHSFSHYGVL RGLHTQPHMG KLVTVVSGEI FDVAVDIRKD SPTYGKWHGV VLNGDNKHAF 120
  121 WIPAGFLHGF QVLSKEGAHV TYKCSAVYDP KTEFGINPFD EDINVDWPIR DKTVVIVSER 180
  181 DTQHASFKSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.09691
Match:	1dzrA
Description:	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dTDP-4-dehydrorhamnose 3,5-epimerase activity	2.99216880710047	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.79850768705664	bayes_pls_golite062009
catalytic activity	0.77242843392921	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.33927425209029	bayes_pls_golite062009
isomerase activity	0.02840080734269	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: