YRC Public Data Repository - Protein Structure Prediction

Protein:	CE03250
Organism:	Caenorhabditis elegans
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03250.

Description	E-value	Query Range	Subject Range
gi\|39580553, gi\|... - gi\|39580553\|emb\|CAE70019.1\| Hypothetical protein CBG16434 [Caenorhabditis briggsae], gi\|187026461\|em...	211.0	[0..1]	[126..1]
gi\|3378458 - gi\|3378458\|emb\|CAA76895.1\| ganglioside-induced differentiation associated protein 3 [Mus musculus]	184.0	[0..3]	[120..8]
gi\|73978838 - gi\|73978838\|ref\|XP_545480.2\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S33 (S33mt) (...	171.0	[0..13]	[120..28]
gi\|109692292, gi... - gi\|62647095\|ref\|XP_216135.3\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S33 (S33mt) (...	163.0	[0..18]	[120..1]
gi\|76779212 - gi\|76779212\|gb\|AAI05794.1\| MRPS33 protein [Homo sapiens]	158.0	[0..17]	[120..1]
RT33_BOVIN - 28S ribosomal protein S33, mitochondrial OS=Bos taurus GN=MRPS33 PE=1 SV=2	155.0	[0..17]	[120..1]
mRpS33-PA - The gene mitochondrial ribosomal protein S33 is referred to in FlyBase by the symbol Dmel\mRpS33 (CG... gi\|220952128 - gi\|220952128\|gb\|ACL88607.1\| mRpS33-PA [synthetic construct]	154.0	[0..21]	[120..13]
gi\|54639193, gi\|... - gi\|54639193\|gb\|EAL28595.1\| GA10300 [Drosophila pseudoobscura pseudoobscura], gi\|125776953\|ref\|XP_001... gi\|194112358, gi... - gi\|195152754\|ref\|XP_002017301.1\| GL22242 [Drosophila persimilis], gi\|194112358\|gb\|EDW34401.1\| GL2224... gi\|54639193\|gb\|E... - GA10300-PA [Drosophila pseudoobscura], GA10300 [Drosophila pseudoobscura pseudoobscura]	152.0	[0..21]	[120..13]
gi\|55241999, gi\|... - gi\|58382750\|ref\|XP_312147.2\| AGAP002777-PA [Anopheles gambiae str. PEST], gi\|55241999\|gb\|EAA07794.3\|... AGAP002777-PA - mRpS33: 28S ribosomal protein S33, mitochondrial\|protein_coding\|2R:27043420:27043755:1\|gene:AGAP0027...	150.0	[0..21]	[121..12]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARLAASRI VHAGRGISQP TPFGKRMDRL SNRVWGEVVM PTDTKSLKVV RVMSAEPYET  60
   61 KEQLSPKYYP NLPMFHYLTK MLRFHGLFFD DHVVFRDVQD NLKIIRGKVV RPPIGQGKRA 120
  121 QLRGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.330	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.281	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.271	c.54.1	IIA domain of mannose transporter, IIA-Man
View	Download	0.237	d.228.1	Replication modulator SeqA, C-terminal DNA-binding domain
View	Download	0.234	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.226	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.212	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains
View	Download	0.202	d.54.1	Enolase N-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits