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View Structure Prediction Details

Protein: CE04848
Organism: Caenorhabditis elegans
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04848.

Description E-value Query
Range
Subject
Range
CE30117 - status:Confirmed UniProt:Q22095 protein_id:AAB36865.2
662.0 [0..1] [392..1]

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Predicted Domain #1
Region A:
Residues: [1-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGALQLLLF VGTVTLVASK LHESPYVTEC FDGHYNFRGV CFQCTPCGDF MYELAKCTDT  60
   61 SNTVCGWCGN KPNLDKISDE VLVSYQTKCL MSSLDFIGMT KLKDELVNVF DDEKDSEEVE 120
  121 ELPIKDNFIK GENLEMIDSN EINYDMARNS LEDVYDSQEH QLPDPTYEEG DDSSSSEEIG 180
  181 EEEKTDENEI GSEIVSEKVK AYMIEKSEKV PSSVKIAKGK TTIVSHEEAE ATFREIEALP 240
  241 NPVRKINQDD YDSSEESNER EIKWDNWVDD QVKPIRTNVE VVEAEEIEEF DQLIAKSLKN 300
  301 RRKILNDETE SSPLFIKNLG SVFVICMGMI IVVTILSITY ALMRAERKEF LGVPTDSQDY 360
  361 HMIIDSSNYI EKLESKEKQA SRHVHVNPVF DV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.11
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle