YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-1
Organism:	Caenorhabditis elegans
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-1.

Description	E-value	Query Range	Subject Range
gi\|116192375, gi... - gi\|88181818\|gb\|EAQ89286.1\| hypothetical protein CHGG_05905 [Chaetomium globosum CBS 148.51], gi\|1161...	145.0	[0..1]	[114..325]
gi\|49092698, gi\|... - gi\|67526431\|ref\|XP_661277.1\| hypothetical protein AN3673.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	130.0	[0..1]	[117..3]
gi\|16945386, gi\|... - gi\|32419429\|ref\|XP_330158.1\| hypothetical protein ( (AL389891) related to prefoldin subunit 1 [Neuro... gi\|85117998 - gi\|85117998\|ref\|XP_965357.1\| hypothetical protein NCU02970 [Neurospora crassa OR74A]	129.0	[0..1]	[116..3]
gi\|11359663 - gi\|11359663\|pir\|\|T50987 related to prefoldin subunit 1 [imported] - Neurospora crassa	123.0	[0..1]	[115..69]
gi\|38108882, gi\|... - gi\|39941420\|ref\|XP_360247.1\| hypothetical protein MG05621.4 [Magnaporthe grisea 70-15], gb\|EAA54830....	120.0	[0..1]	[116..3]
gi\|157755953 - gi\|157755953\|ref\|XP_001670320.1\| Hypothetical protein CBG06021 [Caenorhabditis briggsae AF16] PFD1_CAEBR - Probable prefoldin subunit 1 OS=Caenorhabditis briggsae GN=pfd-1 PE=3 SV=1	113.0	[0..1]	[117..1]
gi\|46108990, gi\|... - gi\|46108990\|ref\|XP_381553.1\| hypothetical protein FG01377.1 [Gibberella zeae PH-1], gi\|42546110\|gb\|E...	112.0	[0..1]	[116..3]
gi\|116118512, gi... - gi\|119114638\|ref\|XP_319396.3\| ENSANGP00000012306 [Anopheles gambiae str. PEST], gi\|116118512\|gb\|EAA1...	111.0	[0..3]	[117..5]
PFD1_PONPY - Prefoldin subunit 1 - Pongo pygmaeus (Orangutan) gi\|55624946 - gi\|55624946\|ref\|XP_517971.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] ENSCJAT00000032698 - null gi\|109078947 - gi\|109078947\|ref\|XP_001086335.1\| PREDICTED: similar to prefoldin subunit 1 [Macaca mulatta] PFD1_PONAB - Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1	110.0	[0..3]	[117..6]
PFD1_BOVIN - Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1	110.0	[0..3]	[117..6]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEEISKAF RDLQFKTNET RMRIVQGEQN KKVNYQKMRI SESTKKNLVD LDENLKYYRS  60
   61 VGRMFLLTDK PAEISRHEAE AKQSKEKIEA IEKQKDYLEK GLVEAETNLR ELIQSRR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.5
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits