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View Structure Prediction Details

Protein: CE05309
Organism: Caenorhabditis elegans
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05309.

Description E-value Query
Range
Subject
Range
gi|187036281, gi... - gi|39595449|emb|CAE60487.1| Hypothetical protein CBG04101 [Caenorhabditis briggsae], gi|187036281|em...
gi|157746255 - gi|157746255|ref|XP_001668224.1| Hypothetical protein CBG04101 [Caenorhabditis briggsae AF16]
629.0 [0..1] [402..1]

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Predicted Domain #1
Region A:
Residues: [1-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAMHMEQKI YKAKFSEYQL ADNFINFNYL LKFKLGPEDV RAKGAFSTIF ESTMLDWDLQ  60
   61 LHKQFAGHIL HSRESNWVIS LNGSGVRDSY PPLHKLYFKV KAMGSDGSIK KSLKYFIDGL 120
  121 PIAPAERRGR MDHRSYTTLQ NTQFERDLST LIAEAKKKAQ TIQLETRLEF KKNDLVDMKY 180
  181 LLGNGAPNMP DSLDYYFDAI TNKSRHDLKL KTSDGMHFVM TNKEIVCLAS QFFRQHLKDT 240
  241 TTEYTVGRAD SVQSIDICLT YMITGIYKKP ALL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [274-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKLAFEIFA LAMQWKVFEP KVLKNSIEKH CCEELQKNYE DIMYVCNMLI IADDAQFANV  60
   61 QNCCIATLVF YHAHDFIRIF VIGNHPLKER FSRRQEFLRP SLTMQVKRAF AASNESKCFI 120
  121 KFLPAIGED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle