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View Structure Prediction Details

Protein: del-1
Organism: Caenorhabditis elegans
Length: 664 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for del-1.

Description E-value Query
Range
Subject
Range
gi|157772408 - gi|157772408|ref|XP_001678024.1| Hypothetical protein CBG07259 [Caenorhabditis briggsae AF16]
gi|39596394, gi|... - gi|39596394|emb|CAE63012.1| Hypothetical protein CBG07259 [Caenorhabditis briggsae], gi|187033517|em...
472.0 [0..3] [664..25]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKYIDILK KSKMMLFQDV GKSFEDDSPC KEEAPKTQIQ HSVRDFCEQT TFHGVNMIFT  60
   61 TSLYWVRFLW VVVSLVCICL CMYSFSHVKD KYDRKEKIVN VELVFESAPF PAITVCNLNP 120
  121 FKNHLARSVP EISETLDAFH QAVVYSNDAT MDELSGRGRR SLNDGPSFKY LQYEPVYSDC 180
  181 SCVPGRQECI AQTSAPRTLE NACICNYD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.78
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [209-664]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHDGSAWPCY SAQTWEKSIC PECNDIGFCN VPNTTGSGNI PCYCQLEMGY CVFQPESRVR  60
   61 RIWEFQGNKI PEKGSPLRKE YMEQLTQLGY GNMTDQVAIT TQAKEKMILK MSGLHPQRRA 120
  121 ALGYGKSELI KMCSFNGQQC NIDTEFKLHI DPSFGNCYTF NANPEKKLAS SRAGPSYGLR 180
  181 LMMFVNSSDY LPTTEATGVR IAIHGKEECP FPDTFGYSAP TGVISSFGIS LRNINRLPQP 240
  241 YGNCLQKDNP QSRSIYKGYK YEPEGCFRSC YQYRIIAKCG CADPRYPKPW KRSAWCDSTN 300
  301 TTTLNCLTTE GAKLSTKENQ KHCKCIQPCQ QDQYTTTYSA AKWPSGSIQT SCDNHSKDCN 360
  361 SYLREHAAMI EIYYEQMSYE ILRESESYSW FNLMADMGGQ AGLFLGASIM SVIEFLFFAV 420
  421 RTLGIACKPR RWRQKTELLR AEELNDAEKG VSTNNN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.045757
Match: 2qtsA
Description: No description for 2qtsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle