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View Structure Prediction Details

Protein: CE05923
Organism: Caenorhabditis elegans
Length: 366 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05923.

Description E-value Query
Range
Subject
Range
gi|157763046 - gi|157763046|ref|XP_001673865.1| Hypothetical protein CBG23071 [Caenorhabditis briggsae AF16]
gi|187021309, gi... - gi|39591922|emb|CAE75142.1| Hypothetical protein CBG23071 [Caenorhabditis briggsae], gi|187021309|em...
669.0 [0..9] [366..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNLTFILF FITIEANAYC PFKKAYVDDI LMITTDDYLS VGQDETSEVC EIEIQSLNGN  60
   61 LILVSITNFL MFSHRRPRNP NEIILRNSDM QFIVDSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKGYQLMKTP VWLTIPMNLN FRSILLFSNP KECSSYESIR CPEYSLCYNC SKYCFSSSLE  60
   61 CDGLDTCGED ESTCAFITPR TPHTSYRYGR DALSSSQIML IGFFALNGSF IVFFLILSLC 120
  121 SAGLFYRCPF YAKNSNASRH TFIRYLRQAI 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.16
Match: 2gtlO
Description: No description for 2gtlO was found.

Predicted Domain #3
Region A:
Residues: [248-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPALAPPPSV QGDQPKDEGE KTLTVPSTPT GHTRHRHSIL SRINFQPAPA LSEIEPEVED  60
   61 REQSPQESIC EPPAHQPEVF LRRQSLPFGL TAVPVSNDLN SKTDDKRNRF ASRAMSFQH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle