| Protein: | dsl-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 302 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dsl-5.
| Description | E-value | Query Range |
Subject Range |
|
|
283.0 | [0..11] | [300..1532] |
|
Region A: Residues: [1-224] |
1 11 21 31 41 51
| | | | | |
1 MQLLAISFLF ITFIIESIIC SGYLELHIQS PHIQTAIVNI SSNFRTEKSK IVHLKLKSNV 60
61 PFNVTRIPVN FDNIYNITIK CGKSEEDGKF NSYFKNSTPK YLGLTDTTIV STVHPRVGLL 120
121 SPAAVARPLN GIRIVIGCNK NWFGEKCETF CDENKATNSG KHCNFQGKPS CLNGLTGSKC 180
181 EKLIVPKLCN CENGGVCIDS NPKPICECSK AYRGEKCEKK HISA
|
| Detection Method: |  |
| Confidence: | 8.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.44119144078508 | bayes_pls_golite062009 |
| receptor binding | 1.40618339011373 | bayes_pls_golite062009 |
| protein binding | 1.15716342217655 | bayes_pls_golite062009 |
| growth factor activity | 0.25853515067422 | bayes_pls_golite062009 |
|
Region A: Residues: [225-302] |
1 11 21 31 41 51
| | | | | |
1 SLSSHYKGDF WNFRMTFWQL IFSNLVENEL AEISKSEAWE TINNLLGNVS DTPFANRPNN 60
61 TETFPITGSV NLDNVDII
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
