YRC Public Data Repository - Protein Structure Prediction

Protein:	djr-1.1
Organism:	Caenorhabditis elegans
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for djr-1.1.

Description	E-value	Query Range	Subject Range
gi\|76796858, gi\|... - gi\|76796858\|ref\|ZP_00779208.1\| Peptidase C56, PfpI [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7... gi\|241904491, gi... - gi\|241904491\|ref\|ZP_04789183.1\| intracellular protease, PfpI family [Thermoanaerobacter brockii subs...	162.0	[0..5]	[169..2]
gi\|255114788, gi... - gi\|255253661\|ref\|ZP_05333232.1\| intracellular protease, PfpI family [Thermoanaerobacter italicus Ab9... gi\|166854258, gi... - gi\|167040018\|ref\|YP_001663003.1\| PfpI family intracellular peptidase [Thermoanaerobacter sp. X514], ... gi\|242257006, gi... - gi\|242257006\|ref\|ZP_04801884.1\| intracellular protease, PfpI family [Thermoanaerobacter sp. X513], g...	161.0	[0..5]	[168..2]
gi\|20807466, gi\|... - gi\|20807466\|ref\|NP_622637.1\| putative intracellular protease/amidase [Thermoanaerobacter tengcongens... gi\|20807466 - gi\|20807466\|ref\|NP_622637.1\| putative intracellular protease/amidase [Thermoanaerobacter tengcongens...	159.0	[0..5]	[171..2]
dj-1beta-PA - The gene dj-1Ã?Ã?Â² is referred to in FlyBase by the symbol Dmel\dj-1Ã?Ã?Â² (CG1349, FBg... gi\|220944526, gi... - gi\|220954494\|gb\|ACL89790.1\| dj-1beta-PA [synthetic construct], gi\|220944526\|gb\|ACL84806.1\| dj-1beta-...	159.0	[0..3]	[185..19]
gi\|32397757, gi\|... - gi\|32473078\|ref\|NP_866072.1\| proteinase I [Rhodopirellula baltica SH 1], gi\|32397757\|emb\|CAD73758.1\|...	158.0	[0..4]	[179..8]
gi\|87286567, gi\|... - gi\|87310810\|ref\|ZP_01092937.1\| proteinase I [Blastopirellula marina DSM 3645], gi\|87286567\|gb\|EAQ784...	157.0	[0..3]	[180..6]
gi\|113941739, gi... - gi\|159897361\|ref\|YP_001543608.1\| PfpI family intracellular peptidase [Herpetosiphon aurantiacus ATCC...	156.0	[0..1]	[179..1]
PARK7_CHICK - Protein deglycase DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1	153.0	[0..2]	[186..1]
gi\|90418768, gi\|... - gi\|90418768\|ref\|ZP_01226679.1\| putative intracellular protease/amidase [Aurantimonas sp. SI85-9A1], ... gi\|90418768, gi\|... - gi\|90418768\|ref\|ZP_01226679.1\| putative intracellular protease/amidase [Aurantimonas sp. SI85-9A1], ...	153.0	[0..6]	[180..8]
gi\|171989565, gi... - gi\|68055527\|ref\|ZP_00539671.1\| Peptidase C56, PfpI [Exiguobacterium sibiricum 255-15], gi\|68007840\|g...	151.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKSALIIL AAEGAEEMEV IITGDVLARG EIRVVYAGLD GAEPVKCARG AHIVPDVKLE  60
   61 DVETEKFDIV ILPGGQPGSN TLAESLLVRD VLKSQVESGG LIGAICAAPI ALLSHGVKAE 120
  121 LVTSHPSVKE KLEKGGYKYS EDRVVVSGKI ITSRGPGTAF EFALKIVELL EGKDKATSLI 180
  181 APMLLKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1j42A
Description:	Crystal Structure of Human DJ-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
binding	1.22860407524238	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
nucleic acid binding	0.34963817887651	bayes_pls_golite062009
omega peptidase activity	0.11699697380316	bayes_pls_golite062009
protein binding	0.0152024556625711	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: