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View Structure Prediction Details

Protein: CE09533
Organism: Caenorhabditis elegans
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09533.

Description E-value Query
Range
Subject
Range
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
220.0 [0..19] [289..330]
gi|62088608 - gi|62088608|dbj|BAD92751.1| lamin B receptor variant [Homo sapiens]
215.0 [0..12] [289..315]
gi|114572885, gi... - gi|114572887|ref|XP_001137563.1| PREDICTED: lamin B receptor isoform 4 [Pan troglodytes], gi|1145728...
215.0 [0..12] [289..314]
LBR_PONPY - Lamin-B receptor - Pongo pygmaeus (Orangutan)
LBR_PONAB - Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1
214.0 [0..12] [289..314]
gi|154152031, gi... - gi|76637075|ref|XP_870187.1| PREDICTED: similar to Lamin B receptor isoform 2 [Bos taurus], gi|15415...
214.0 [0..10] [289..318]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNSTPPPT FFGRIVFHLT SDDVFRTAIF AFIASFTVIA AVASVTGSFL VGLLASVIVL  60
   61 LVAYAVGESC EFINNQILMP AAFLGCAVAV NLVYTVAHEG ELWEYFSRYF LFLSVFHFSE 120
  121 FVFTALTNRR TLGPDSFLLK HSFGYWLAAS IGWIEF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [157-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIEANFYPEI KMYSVLWIGT FGCIIGEIVR KVGMVHAGLA FTHLMARTKR SGHTLINTGI  60
   61 YAYMRHPGYF GWFIWAVSTQ IVLCNPISFV IYTFVTWRFF ANRIEIEEKD LISFFGDDYA 120
  121 EYQRKTWSGV PFARGYQKP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 43.823909
Match: PF04140.5
Description: No description for PF04140.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle