YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10110
Organism:	Caenorhabditis elegans
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10110.

Description	E-value	Query Range	Subject Range
gi\|57208663 - gi\|57208663\|emb\|CAI42819.1\| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]	114.0	[0..7]	[133..175]
gi\|114682565 - gi\|114682565\|ref\|XP_514710.2\| PREDICTED: staufen isoform 8 [Pan troglodytes]	113.0	[0..7]	[133..256]
gi\|209364604 - gi\|209364604\|ref\|NP_001126609.1\| staufen, RNA binding protein, homolog 1 [Pongo abelii] gi\|55732106 - gi\|55732106\|emb\|CAH92759.1\| hypothetical protein [Pongo abelii]	113.0	[0..7]	[133..174]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISCQKSAL AANVRKTEKK QATMKKDEEI DVLNPVAQLN EYAQKFYKKY PTFEFVKEQA  60
   61 VGKHRVFIIQ ATFEDKTLEG RGPSKMIAKR AAAEAILESI GFIKPSLRKF SDKFREKSER 120
  121 AFRQFSAFFK LIFRQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1o0wA
Description:	RNase III endonuclease catalytic domain; RNase III, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.602312874472495	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: