YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11722
Organism:	Caenorhabditis elegans
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11722.

Description	E-value	Query Range	Subject Range
gi\|39595670, gi\|... - gi\|39595670\|emb\|CAE67172.1\| Hypothetical protein CBG12604 [Caenorhabditis briggsae], gi\|187029214\|em... gi\|157747475 - gi\|157747475\|ref\|XP_001668832.1\| Hypothetical protein CBG12604 [Caenorhabditis briggsae AF16]	277.0	[0..1]	[191..110]
gi\|73957430 - gi\|73957430\|ref\|XP_546845.2\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Canis familiari...	213.0	[0..7]	[124..460]
gi\|109508866, gi... - gi\|109508866\|ref\|XP_001077096.1\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Rattus norv...	212.0	[0..7]	[124..380]
gi\|109129138 - gi\|109129138\|ref\|XP_001098366.1\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 prote...	212.0	[0..7]	[124..462]
gi\|89040506, gi\|... - gi\|89040506\|ref\|XP_933557.1\| PREDICTED: similar to Ataxin-1 (Spinocerebellar ataxia type 1 protein h...	212.0	[0..7]	[124..437]
gi\|114663539 - gi\|114663539\|ref\|XP_511093.2\| PREDICTED: hypothetical protein [Pan troglodytes]	211.0	[0..7]	[124..360]
gi\|76640846 - gi\|76640846\|ref\|XP_599282.2\| PREDICTED: similar to spinocerebellar ataxia 1 homolog [Bos taurus]	209.0	[0..7]	[124..49]
gi\|50754085 - gi\|50754085\|ref\|XP_425139.1\| PREDICTED: hypothetical protein [Gallus gallus]	202.0	[0..5]	[124..456]
ATX1_MOUSE - Ataxin-1 OS=Mus musculus GN=Atxn1 PE=1 SV=2	200.0	[0..6]	[124..542]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTIPASTYY PTHFMRGTQL NVANGNIKKV EDLSSDDFLR CAAESDDVIV NASVIKSIKS  60
   61 TAGSVTIIFE TGIEKQLIPL KCQVEHPFFV LGKGWCSCNP RKSGENYGLD CEILQVDDVC 120
  121 IVLTRNEDKI TDCAVDIVTA ERDLELFSQR AALKEQLVDV YYERVSGRVS APPERVLVTF 180
  181 SNEHRERRIS E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	1oa8A
Description:	AXH domain of human spinocerebellar ataxin-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits