YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14794
Organism:	Caenorhabditis elegans
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14794.

Description	E-value	Query Range	Subject Range
gi\|39586945, gi\|... - gi\|39586945\|emb\|CAE62880.1\| Hypothetical protein CBG07066 [Caenorhabditis briggsae], gi\|187033650\|em... gi\|157753916 - gi\|157753916\|ref\|XP_001680670.1\| Hypothetical protein CBG07066 [Caenorhabditis briggsae AF16]	145.0	[0..1]	[109..1]
mge-PB - The gene maggie is referred to in FlyBase by the symbol Dmel\mge (CG14981, FBgn0035473). It is a pro...	135.0	[0..5]	[107..15]
gi\|41581261 - gi\|41581261\|emb\|CAE47910.1\| mitochondrial import receptor subunit tom22 homologue, putative [Aspergi...	129.0	[0..10]	[99..45]
gi\|91090252 - gi\|91090252\|ref\|XP_969934.1\| PREDICTED: similar to maggie CG14981-PA [Tribolium castaneum]	120.0	[0..7]	[107..34]
TOM22_NEUCR, OM2... - Mitochondrial import receptor subunit tom-22 OS=Neurospora crassa GN=tom-22 PE=2 SV=1, (Q07335) Mito... TOM22_NEUCR - Mitochondrial import receptor subunit tom22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...	117.0	[0..6]	[109..31]
gi\|21299185, gi\|... - gi\|31212799\|ref\|XP_315384.1\| ENSANGP00000021073 [Anopheles gambiae str. PEST], gi\|21299185\|gb\|EAA113...	116.0	[0..4]	[97..149]
gi\|115618192 - gi\|115618192\|ref\|XP_797896.2\| PREDICTED: similar to GekBS036P, partial [Strongylocentrotus purpuratu...	114.0	[0..14]	[102..1]
gi\|70995594, gi\|... - gi\|70995594\|ref\|XP_752552.1\| mitochondrial import receptor subunit tom22 [Aspergillus fumigatus Af29... gi\|159131307 - gi\|159131307\|gb\|EDP56420.1\| mitochondrial import receptor subunit tom22 [Aspergillus fumigatus A1163...	114.0	[0..10]	[96..45]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVRDDFDD IPDSEIHETI VERIEGLGEM FPDALRSAVH STVDWSIWGV KGVFSLTKST  60
   61 IWVVSTTSLI AFLPYIIEKE RSDLEKTQVA QQRQMLLGPS AAIQQAKTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.866	a.24.17	Group V grass pollen allergen
View	Download	0.866	a.24.17	Group V grass pollen allergen
View	Download	0.849	a.7.16	Description not found.
View	Download	0.834	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.834	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.785	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.779	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.779	a.177.1	Sigma2 domain of RNA polymerase sigma factors

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits