YRC Public Data Repository - Protein Structure Prediction

Protein:	vps-37
Organism:	Caenorhabditis elegans
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps-37.

Description	E-value	Query Range	Subject Range
gi\|157763712 - gi\|157763712\|ref\|XP_001674199.1\| Hypothetical protein CBG09364 [Caenorhabditis briggsae AF16] gi\|187031908, gi... - gi\|39593139\|emb\|CAE64608.1\| Hypothetical protein CBG09364 [Caenorhabditis briggsae], gi\|187031908\|em...	170.0	[0..1]	[234..409]
gi\|109105950 - gi\|109105950\|ref\|XP_001083551.1\| PREDICTED: similar to vacuolar protein sorting 37C [Macaca mulatta]	129.0	[0..16]	[227..163]
gi\|113419134 - gi\|113419134\|ref\|XP_944496.2\| PREDICTED: similar to vacuolar protein sorting 37D [Homo sapiens]	126.0	[0..17]	[228..225]
gi\|114637850 - gi\|114637850\|ref\|XP_508469.2\| PREDICTED: hypothetical protein [Pan troglodytes]	122.0	[0..16]	[227..166]
VP37C_PONAB - Vacuolar protein sorting-associated protein 37C OS=Pongo abelii GN=VPS37C PE=2 SV=1 gi\|55729494 - gi\|55729494\|emb\|CAH91478.1\| hypothetical protein [Pongo abelii]	112.0	[0..19]	[227..1]
VP37C_MOUSE - Vacuolar protein sorting-associated protein 37C OS=Mus musculus GN=Vps37c PE=1 SV=1	111.0	[0..22]	[232..4]
gi\|68433668 - gi\|68433668\|ref\|XP_700656.1\| PREDICTED: similar to RIKEN cDNA 5730409F24 [Danio rerio]	109.0	[0..19]	[228..1]
gi\|73983865 - gi\|73983865\|ref\|XP_540924.2\| PREDICTED: similar to vacuolar protein sorting 37C [Canis familiaris]	108.0	[0..13]	[227..13]
gi\|149063285, gi... - gi\|34872327\|ref\|XP_213769.2\| PREDICTED: similar to vacuolar protein sorting 37B [Rattus norvegicus],...	107.0	[0..13]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSQNPYESH VDVAVSAASA NLRNMTNEQL ISLLDDDALL ESIIVNLPQV RSMPTDKESA  60
   61 LAANKSLAEW NLAQKPRIDA AKTQTVDLYD QVKKLQGEVA VLKSQLDSVS SSKSLDTTSS 120
  121 LMQVAAQEAD DDAEALFTQF ENGEISVEIF LKQFKDKKTI AHLRKIKSDR LAALLREQTY 180
  181 SSYAQPTVPP PMPHAQPGYP TGNHMPGIGN IQFGSGYSGY PNISQPSAGR HPFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits