YRC Public Data Repository - Protein Structure Prediction

Protein:	dsl-1
Organism:	Caenorhabditis elegans
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dsl-1.

Description	E-value	Query Range	Subject Range
gi\|553348 - gi\|553348\|gb\|AAA52703.1\| hexabrachion [Homo sapiens]	143.0	[0..14]	[244..1]
gi\|56800394, gi\|... - gi\|56800511\|emb\|CAI35934.1\| odd Oz\/ten-m homolog 2 (Drosophila) [Mus musculus], gi\|56800489\|emb\|CAI...	141.0	[0..8]	[252..590]
gi\|109079680 - gi\|109079680\|ref\|XP_001090815.1\| PREDICTED: similar to odd Oz/ten-m homolog 2 isoform 6 [Macaca mula...	141.0	[0..8]	[252..469]
gi\|73979526 - gi\|73979526\|ref\|XP_857823.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 3 [Canis familiari...	141.0	[0..22]	[248..565]
gi\|68440657 - gi\|68440657\|ref\|XP_688293.1\| PREDICTED: similar to secreted protein SST3 [Danio rerio]	141.0	[0..7]	[243..2109]
gi\|51173739 - gi\|51173739\|ref\|NP_989428.2\| odz, odd Oz/ten-m homolog 2 isoform 1 [Gallus gallus]	139.0	[0..8]	[252..618]
gi\|115893463, gi... - gi\|115930648\|ref\|XP_001178590.1\| PREDICTED: similar to fibropellin Ib [Strongylocentrotus purpuratus...	134.0	[0..3]	[252..1646]
gi\|2266927 - gi\|2266927\|gb\|AAB88281.1\| odd Oz protein [Drosophila melanogaster]	132.0	[0..22]	[248..514]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYLIFLAI LISVVHSNGY MTIRLKSAFP LNVTVEVAEE VYFPTNKRSF NLQLKPNRVG  60
   61 FVSNIPVKFG RPGLVLVDCS PVEKFQIHRV TLRSIRWNTH VRSVASDNIF LPFTGFRYDI 120
  121 KCNRYWHGLH CDHFCNDDFA RTINRRCTQN GTLGCLEGFH GPNCELPVPA DSCKCQNGGK 180
  181 CVSSLENTWA QNGSLICECR LGHFEGKHCE KKSFNYFPKI EATTYATKDS HLARQFYNNS 240
  241 RVPNELATLP RL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	1jv2B
Description:	Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits