| Protein: | puf-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 502 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for puf-3.
| Description | E-value | Query Range |
Subject Range |
|
|
429.0 | [0..20] | [501..597] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MSQNTGSSNL GRYYESPPTA TEARGTFGGC FNANSSTNIW TPNRKVDSSM GFRSSSPTPQ 60
61 SAWAPNRQGF GGQFSKWRTS TPMTTPARYP QQAVRLIDLE NNASFSKSLN STTRSHKCTL 120
121 PIWAGDGEGN VS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [133-502] |
1 11 21 31 41 51
| | | | | |
1 DSVTLQDVLA NDALVEFATD KNGCRFLQEH YPTENDNDVH QKLFRKLVED RAIFLSLCSN 60
61 MFGNFFVQRV LECSNTEEQE ILTEHLATDL YNLCLDKSAC RVIQLAIQKL DVHLATRLSL 120
121 ELRDTHLVRL SIDQNGNHVI QKIVKTLPVS SWTFLVDFFA DDDNLIHVCQ DKYGCRVIQS 180
181 TVETLSTDQY AQCYQHRVIL LRSLMAGVTR NCTQLASNEF ANYVVQHVIK CGDALAVYRD 240
241 IIIEQCLLQN LLSMSQEKYA SHVVEVAFEC APYRLVAEMM NEIFEGYIPH PDTNRDALDI 300
301 LLFHQYGNYV VQQMIQTCVL GQNARDQKQS EMYGMWLEKI HGRVMRNAHR LERFSSGKKI 360
361 IEALQSMSLY
|
| Detection Method: | |
| Confidence: | 104.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.72717267135753 | bayes_pls_golite062009 |
| protein transporter activity | 1.12211290620813 | bayes_pls_golite062009 |
| protein binding | 1.01840651819417 | bayes_pls_golite062009 |
| transporter activity | 0.89694340608107 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.40908371617242 | bayes_pls_golite062009 |
