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View Structure Prediction Details

Protein: CE18748
Organism: Caenorhabditis elegans
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18748.

Description E-value Query
Range
Subject
Range
CE18750 - status:Confirmed UniProt:Q9XTF7 protein_id:CAB05224.1
300.0 [0..1] [341..1]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQNILVCLA FAVVVSAAGN VCKTGKAINK PVIDGTPVYW PASWTETQPA PQLEKGQSCS  60
   61 WIVTIPHGYY AKLIISGKTT DKDSRFQTVD AAGNLIQTTQ ENMEPYYFPA SKFTIAVTNE 120
  121 GSATFAFKVV WWPLPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 1szbA
Description: Crystal structure of the human MBL-associated protein 19 (MAp19)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.00860492535308899 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [137-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQFVGLVGTT GLVVNATETV SAMGFYIPGG LTLLSFPEDL KNYISLRSTL IFEGKNMDSA  60
   61 NYIASLYQLY QKKVQWRTIQ QNINIVNLEA SRSNNKVLLQ GSQYLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [243-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIDEIVELHP QPNSIYNGTL NGGTKMSSLV AVSDLKLQMI DAQMEDASTV TVYYGSPDVF  60
   61 TLDKTYTKGQ LVKALPLTFN GHFVQFVVSK GKAVFTFKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle