YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE18750
Organism: Caenorhabditis elegans
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18750.

Description E-value Query
Range
Subject
Range
CE18748 - status:Confirmed UniProt:Q9XUD8 protein_id:CAB05218.1
312.0 [0..1] [341..1]

Back

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQKLLAFLT VVVFVSAAGN SCKIGKVINK PVIDGTPVYW PASWNETQPA PQLEKEQSCS  60
   61 WYVTIPRGYY AKLIISGKTT DKDSRFQTVD SAGNLIQTTH EKMVPYYFPA SKFTLAVSNE 120
  121 GSATFAFKVV WWPLP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1sfpA
Description: CRYSTAL STRUCTURE OF ACIDIC SEMINAL FLUID PROTEIN (ASFP) AT 1.9 A RESOLUTION: A BOVINE POLYPEPTIDE FROM THE SPERMADHESIN FAMILY
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.00860492535308899 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [136-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEKYVDIVAS IGQVINVTET VVAMEYAAPG GITLLTFPED LKNYNSLRST LIYDGSSLTS  60
   61 ATYVSNLFLL NQSKKQWTSS QDGIVVVNVE ASRSMNKLLI QGSVYLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [243-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIDEIVELHP QPNSIYNGTV NAGAHMSSLV AVSDLELQMI DVQMKDDSTV SVYYGSPDAF  60
   61 TLDKTYTGAE LKKALPLPFG GYFVQFVVSS GKAVFTFKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle