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View Structure Prediction Details

Protein: nkcc-1
Organism: Caenorhabditis elegans
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nkcc-1.

Description E-value Query
Range
Subject
Range
nkcc-1 - Amino acid permease status:Partially_confirmed UniProt:Q9XTE7 protein_id:CAB05202.1
422.0 [0..1] [212..1]
gi|157754931 - gi|157754931|ref|XP_001669809.1| Hypothetical protein CBG18756 [Caenorhabditis briggsae AF16]
gi|39581643, gi|... - gi|39581643|emb|CAE71764.1| Hypothetical protein CBG18756 [Caenorhabditis briggsae], gi|187024726|em...
400.0 [0..1] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNGENGTD EKQKLLSVVG VVSEEVVEMN RVSSARFQVS KTDEDEKTSD DNLRKLKSGS  60
   61 EPPPPTQNHE AVTLVTRKMS ATGRFMVTSD TNPGQLVAEV ADELGIDVPI DPPAEKSPAS 120
  121 RAKGVHFSVG DKDSGSMSED GDEKRNITHE NQTTFNMKSW RNMKTIEHPP IIDFYRNSID 180
  181 TDGVFNRPSM AQLIHGKEHK EQDLGFEELN KKPETAQLAK VIGLNLLSKE DQERRDFERK 240
  241 KRINQQKLQE MHKMHKETYN FR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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