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View Structure Prediction Details

Protein: lin-8
Organism: Caenorhabditis elegans
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-8.

Description E-value Query
Range
Subject
Range
CE23861 - status:Confirmed UniProt:Q9N5J4 protein_id:AAF39917.1
299.0 [0..16] [384..8]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIKTHSTG SKRTVPFYKL PPPVPLPPLP PPDPTRYFST EKYIALSKDE KFKFDDYDVN  60
   61 DETLKKVVLN EIGKCPDIWS SRSQAAIMEH YPIVATETYR RTGLLLSIKS LKQIYKCGKD 120
  121 NLRNRLRVAI VSKRLTPAQV EAYMWRWEFY GFIRYYRDYT QRWEADLLKD LDVVLGLEAR 180
  181 RAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [184-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNMEKVDSGE LMEPMEPMDS TMDEMCVEEE PYEETGSNWS DPAPEPSQSK SQSPEAKYPQ  60
   61 AYLLPEADEV YNPDDFYQEE HESASNAMYR IAFSQQYGGG GSPAVQKPVT FSAQPAPAPV 120
  121 REAPSPVVEN VSSSSFTPKP PAMINNFGEE MNQITYQAIR IAREQPERLK LLRKALFDVV 180
  181 LAFDQKEYAD VGDLYRDLAQ KNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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