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View Structure Prediction Details

Protein: stn-1
Organism: Caenorhabditis elegans
Length: 423 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stn-1.

Description E-value Query
Range
Subject
Range
stn-1 - beta1-syntrophin status:Partially_confirmed UniProt:Q93646 protein_id:CAB03025.1
329.0 [0..1] [416..1]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVRSGLVD IFVQGQWHRV LATLDPTAIT LQTMEQNEAE AEKRTVRVVK YDGNGLGISI  60
   61 KGGRDNNMPI VISKIFKGMA ADQAGELFLD DVIISVNGEN LLDASHEEAV RALKRAGRVV 120
  121 DLQVQYRRED MMHRENIVEN VEW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.30103
Match: 1z87A
Description: solution structure of the split PH-PDZ Supramodule of alpha-Syntrophin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [144-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDIRERVRT IGLKLAYVAR AGIDADAEGR ILEMRSPSGR YSLAMRCSSS EEADGWFEAL  60
   61 HACTTCLLTQ ALAQVNIMLG NNPQVRHMGW IAEQVSENGI SMWKPKFMTL TNSEILFYEA 120
  121 VPQLKAEWAE PRLVRPLVAT RVVQTSSRTA PVIKGLTDVI SFRMRTGTQQ GVRTHTIRVE 180
  181 THAELARWVR AVVIGGYEAC LSTSQVSAPC LWRGESCELI VNLDNGISLL SSTGEVLWQH 240
  241 SFETIRATGD DGGRFLWVDF GPPHGEQVKM DFILTLISYL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1jxmA
Description: Psd-95; Guanylate kinase-like domain of Psd-95
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle