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View Structure Prediction Details

Protein: fat-2
Organism: Caenorhabditis elegans
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fat-2.

Description E-value Query
Range
Subject
Range
FAD6E_ARATH - Delta(12)-fatty-acid desaturase OS=Arabidopsis thaliana GN=FAD2 PE=1 SV=1
257.0 [0..2] [367..10]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIATKVNTN KKDLDTIKVP ELPSVAAVKA AIPEHCFVKD PLTSISYLIK DYVLLAGLYF  60
   61 AVPYIEHYLG WIGLLGWYWA MGIVGSALFC VGHDCGHGSF S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYEWLNDLCG HLAHAPILAP FWPWQKSHRQ HHQYTSHVEK DKGHPWVTEE DYNNRTAIEK  60
   61 YFAVIPISGW LRWNPIYTIV GLPDGSHFWP WSRLFETTED RVKCAVSGVA CAICAYIAFV 120
  121 LCDYSVYTFV KYYYIPLLFQ GLILVIITYL QHQNEDIEVY EADEWGFVRG QTQTIDRHWG 180
  181 FGLDNIMH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [290-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NITNGHVAHH FFFTKIPHYH LLEATPAIKK ALEPLKDTQY GYKREVNYNW FFKYLHYNVT  60
   61 LDYLTHKAKG VLQYRSGVEA AKAKKAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle