YRC Public Data Repository - Protein Structure Prediction

Protein:	CE21928
Organism:	Caenorhabditis elegans
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE21928.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	137.0	[0..3]	[106..43]
gi\|160872103, gi... - gi\|94494048\|ref\|ZP_01301251.1\| hypothetical protein Rgryl_01000578 [Rickettsiella grylli], gi\|160872...	137.0	[0..2]	[106..5]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	137.0	[0..3]	[106..43]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	132.0	[0..3]	[106..5]
gi\|148654106, gi... - gi\|91770948\|ref\|ZP_01272767.1\| Thioredoxin [Psychrobacter sp. PRwf-1], gi\|91719962\|gb\|EAS85892.1\| Th...	132.0	[0..3]	[106..5]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	132.0	[0..3]	[106..5]
gi\|25282752 - pir\|\|AD0471 thioredoxin 1 [imported] - Yersinia pestis (strain CO92) gi\|45437796, gi\|... - gi\|45442929\|ref\|NP_994468.1\| thioredoxin 1 [Yersinia pestis biovar Microtus str. 91001], gi\|45437796... gi\|21957044, gi\|... - gi\|22124275\|ref\|NP_667698.1\| thioredoxin 1 [Yersinia pestis KIM], gi\|21957044\|gb\|AAM83949.1\|AE013636... gi\|149289382, gi... - gi\|153997076\|ref\|ZP_02022209.1\| thioredoxin 1 [Yersinia pestis CA88-4125], gi\|149289382\|gb\|EDM39460.... gi\|15981783, gi\|... - gi\|218930871\|ref\|YP_002348746.1\| thioredoxin 1 [Yersinia pestis CO92], gi\|16124003\|ref\|NP_407316.1\| ... gi\|167055055, gi... - gi\|167425907\|ref\|ZP_02317660.1\| thioredoxin [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|51587804, gi\|... - gi\|51594522\|ref\|YP_068713.1\| thioredoxin 1 [Yersinia pseudotuberculosis IP 32953], gi\|51587804\|emb\|C... gi\|167420843, gi... - gi\|167420843\|ref\|ZP_02312596.1\| thioredoxin [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|186893520, gi... - gi\|186893520\|ref\|YP_001870632.1\| thioredoxin [Yersinia pseudotuberculosis PB1/+], gi\|186696546\|gb\|AC... gi\|169752779, gi... - gi\|170026245\|ref\|YP_001722750.1\| thioredoxin [Yersinia pseudotuberculosis YPIII], gi\|169752779\|gb\|AC... gi\|89103427, gi\|... - gi\|89103427\|ref\|ZP_01176005.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... Q66G18\|Q66G18_YERPS - Thioredoxin 1 - Yersinia pseudotuberculosis gi\|108806148, gi... - gi\|108806148\|ref\|YP_650064.1\| thioredoxin 1 [Yersinia pestis Antiqua], gi\|108778061\|gb\|ABG12119.1\| t... gi\|229682448, gi... - gi\|229900429\|ref\|ZP_04515558.1\| thioredoxin 1 [Yersinia pestis Nepal516], gi\|229682448\|gb\|EEO78535.1... gi\|229837201, gi... - gi\|229837201\|ref\|ZP_04457366.1\| thioredoxin 1 [Yersinia pestis Pestoides A], gi\|229706144\|gb\|EEO9215... gi\|229695927, gi... - gi\|229839561\|ref\|ZP_04459720.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... gi\|229686904, gi... - gi\|229900124\|ref\|ZP_04515261.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|166009693, gi... - gi\|166009693\|ref\|ZP_02230591.1\| thioredoxin [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599... gi\|165921813, gi... - gi\|165926289\|ref\|ZP_02222121.1\| thioredoxin [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... gi\|167402076, gi... - gi\|167402076\|ref\|ZP_02307555.1\| thioredoxin [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|166205236, gi... - gi\|166213563\|ref\|ZP_02239598.1\| thioredoxin [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|162354023, gi... - gi\|77634499\|ref\|ZP_00796598.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|152961526, gi... - gi\|77630765\|ref\|ZP_00793351.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pseudot...	132.0	[0..3]	[106..5]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	132.0	[0..5]	[106..115]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	131.0	[0..3]	[106..6]
gi\|83776783 - gi\|83776783\|gb\|ABC46707.1\| chloroplast thioredoxin M-type [Arachis hypogaea]	131.0	[0..3]	[106..77]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAIKDDDE FKTIFAEKKT QPVILFFTAS WCGPCQMIKP RVEELAAEHK DRLSILKIDV  60
   61 DECDGVGEEY EINSMPTFLL IVDGIKKDQF SGANNTKFEE MVKAALQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2h73A
Description:	No description for 2h73A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits