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View Structure Prediction Details

Protein: pha-1
Organism: Caenorhabditis elegans
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pha-1.

Description E-value Query
Range
Subject
Range
pha-1 - status:Confirmed UniProt:Q7YXC4 protein_id:CAD91711.1
607.0 [0..1] [491..1]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPNSSCTI LFENLYDNDL ALKLFNNRTI VDNILRNVKG DINNRLELRV SHRGAFSAET  60
   61 IFSGNLVSLM PLHRSYTIFK PRLTSFQLVN KSFNLAAIHV IRKENRTVVF HKFNRCDRLH 120
  121 KISPCPDCSV HLNSVKLNKK NIFQYARFLK QTMKIMVIKI RIEDSKRVCC MITDVHQVIH 180
  181 KSLIGSDYDK VEEFVGIDQI SFSTCIPCEK IAANCKVFGP VQNDMFNAIL RL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHHYDVLQVK DMRLYKLMIL NKEDPTVVED FINSNITCSK LTIFLMYMYE KEAFGYSLPR  60
   61 EFLDLLIKKW NVKTVEIVPR QDQPIPYYFH CNTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [327-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIVPKAKFYV DYWTQPRSKY TLDGVEIDLQ LTKVVEQQIK NRKSLFDNFI ANARRIFPSN  60
   61 KITVRFSKEV CQEMMSQGNV EDFISGIILM TQKDAQPNSH ISLKLYPEEV DAPLIDSFLR 120
  121 ENFEKKFDSW NLETVSDSSA NLPAEKCYQF FNQSTNCKII FYICC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle