| Protein: | mab-9 |
| Organism: | Caenorhabditis elegans |
| Length: | 346 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mab-9.
| Description | E-value | Query Range |
Subject Range |
|
|
342.0 | [0..1] | [346..1] |
|
Region A: Residues: [1-346] |
1 11 21 31 41 51
| | | | | |
1 MSKRCASDRD DKDSEPVKKP RFSIANILDE VEDEEDVEVD VEDVDDVDLS SIPSKSPERS 60
61 RGRPKIGLKM KEGNLPIECK LEGSELWAKF FDLGTEMIIT KSGRRMFPTV KVSFTNVILD 120
121 ALYYIFLDVV PVDSKRYRYI YNKSAWLTAG KAEPVPKNRY YLHPDSPFTG DQLLKHVISF 180
181 EKTKLTNNEV DKTGHLILNS MHKYQPRIHI VQRQKANPLD PNKVVMSEEK HCTYTFPETQ 240
241 FMAVTAYQNQ LITKLKIEKN PFAKGFRDPT GRSPDEMERS PGDMMLSNFY HSSALQQAMF 300
301 QQCLSKTLQL NPSIMMLYQN VFPTGNSLPA APTVPGNPAE ISIKSE
|
| Detection Method: |  |
| Confidence: | 79.30103 |
| Match: | 1h6fA |
| Description: | T-box protein 3, tbx3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.82913410895101 | bayes_pls_golite062009 |
| DNA binding | 3.66817147088612 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64801189357929 | bayes_pls_golite062009 |
| nucleic acid binding | 3.4281783503437 | bayes_pls_golite062009 |
| transcription factor activity | 3.00834358271623 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.78676291654359 | bayes_pls_golite062009 |
| protein binding | 2.61625563263605 | bayes_pls_golite062009 |
| transcription activator activity | 2.550621891551 | bayes_pls_golite062009 |
| DNA strand annealing activity | 1.17814334604363 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.03496325074066 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.90477390899557 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.67715424282347 | bayes_pls_golite062009 |
| chromatin binding | 0.34201146905158 | bayes_pls_golite062009 |
| transcription repressor activity | 0.21694638611622 | bayes_pls_golite062009 |
| protein dimerization activity | 0.0889583851427092 | bayes_pls_golite062009 |
