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View Structure Prediction Details

Protein: ppfr-4
Organism: Caenorhabditis elegans
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppfr-4.

Description E-value Query
Range
Subject
Range
gi|61369184, gi|... - gi|61369184|gb|AAX43297.1| immunoglobulin [synthetic construct], gi|30584781|gb|AAP36643.1| Homo sap...
359.0 [0..1] [327..1]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELSDEEIS LQALYDPSKK VIGDIEDGIF STPELQPRIK TGIDNLQLVT KLVNQMRLFS  60
   61 SNEQIEDVPT NSLPYLLVPC FLGILHQNLM TEPGLKLDEL RKSKIYMRNF LDRLRDLCLI 120
  121 TTRLPWEDED TEEQNLKEKP KLAVEEIRRL KLERHKKKQE LKMAELRIQK QLEAVSIDEQ 180
  181 NLRELYITQL LFWSERCYEE LQAIDDELPL LKMMAERASH PHRHPAPPPA TKTVPTLKPF 240
  241 IITRDAQQKQ VFGLGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 2v0pA
Description: No description for 2v0pA was found.

Predicted Domain #2
Region A:
Residues: [257-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGIPAMSVDE WYHQKFGHNP QNAPQSSAPA GAEAQESEEE VDDDEARAKA MRWDEYKDDH  60
   61 RRGWGNMHNK G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle