| Protein: | gar-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 585 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-3.
| Description | E-value | Query Range |
Subject Range |
|
|
343.0 | [0..74] | [570..21] |
|
Region A: Residues: [1-312] |
1 11 21 31 41 51
| | | | | |
1 MQSSSLGNAD DPRFRQTHLF QMLVKVINTS AENATKTAIA TSSTSTPSFV DTYSTSSLLG 60
61 EEGRMVMIVV IGAMFALVTS LGNLMVMVSF KIDKQLQTIS NYFLFSLAVA DIAIGVISIP 120
121 MFTYYTAIQK WDLGYTMCQF WLCIDYLMSN ASVLNLLLIS FDRYFSVTRP LSYRPRRTTK 180
181 KALTMIACTY IISLILWPPW IISWPYIEGK FTAEPGTCVV QFLQTNPYVT VGTAVAAFYL 240
241 PVTIMCILYT RVYWETQKRQ KEFGKLQATQ FSRRSMKRDV SSTSIIKSSG SMRKKNNQDG 300
301 YVEDSVTPCT SS
|
| Detection Method: |  |
| Confidence: | 34.39794 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [313-421] |
1 11 21 31 41 51
| | | | | |
1 RNSKRKSWLR NCTGKSNSSS EDSSEAVAMN LDDTSLSSSH FALSGSRRRN ISPPCTPMPT 60
61 NFEDEEQTDA GASMRNGSAR FRSRPSDTGK NNNSDTYTVL IELNDEGSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [422-585] |
1 11 21 31 41 51
| | | | | |
1 PSVRLSSCEP YLDEPISTRN RSKSDCNSEI DERRHSLLNK QSPFKNGRIL KNFSSQERKS 60
61 EKEQRKNERK QESKAAKTLS AILCAFIATW TPYNLIVCWE AFFPNTVPNV LWTFSYFLCY 120
121 INSTINPLCY ALCNARFRHT YMRILRCKFK AERPTMNQGY VRRN
|
| Detection Method: | |
| Confidence: | 4.14 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
