Protein: | acc-1 |
Organism: | Caenorhabditis elegans |
Length: | 466 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acc-1.
Description | E-value | Query Range |
Subject Range |
|
327.0 | [0..31] | [458..266] |
Region A: Residues: [1-348] |
1 11 21 31 41 51 | | | | | | 1 MSHPGWIMVS FLTELLSQSS KGIAQSLDNC ANDTEIINAL LKDSYNKHYI PSHPTHVRVD 60 61 MWVQEVTSVS ELTQDFEIDL YINEFWEDPA LVYEDMNPCK RNISFDDKVL QRLWLPNTCF 120 121 INSKSAAIHE SPFKNVFLMV FSNGTLWTNY RMKLTGPCDM KLKRFPFDKQ KCYLTFESFN 180 181 YNTGEVRMQW NQPYPVILLK RIELPDFKLV NFSVIAVEQM YPAGWWDELT VAFVFERRYG 240 241 WYVLQGYIPT MVTIVISWIS FYLGPRAIPA RTMLGVNSLL AMTFQFGNII RNLPRVSYVK 300 301 AIDVWMLSGM LFIFLSLLEL AVVGFMSRNE GLPPKVKKRK RQEDDDEG |
Detection Method: | ![]() |
Confidence: | 65.0 |
Match: | 2bg9A |
Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [349-466] |
1 11 21 31 41 51 | | | | | | 1 FSWKSMQTSP HLELRQFWVD KRVNSLRNDS AVPPVEDYAP MELEQPYQNI TKRREKRKWM 60 61 SGLRKKWRAM RELRPETVDF YSAIFFPTAY MLFNISYWSF YLTSLSEYFD EDVNIDQP |
Detection Method: | ![]() |
Confidence: | 27.69897 |
Match: | 1oedB |
Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
cation channel activity | 11.1823056937132 | bayes_pls_golite062009 |
ion channel activity | 11.1753684044644 | bayes_pls_golite062009 |
nicotinic acetylcholine-activated cation-selective channel activity | 11.1208555364265 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 11.0903806681397 | bayes_pls_golite062009 |
channel activity | 11.0903806681397 | bayes_pls_golite062009 |
gated channel activity | 11.0397691626728 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 10.9870635461822 | bayes_pls_golite062009 |
substrate-specific channel activity | 10.9375522860542 | bayes_pls_golite062009 |
extracellular ligand-gated ion channel activity | 9.75096408199907 | bayes_pls_golite062009 |
excitatory extracellular ligand-gated ion channel activity | 9.75096408199907 | bayes_pls_golite062009 |
ligand-gated channel activity | 9.34902726749692 | bayes_pls_golite062009 |
ligand-gated ion channel activity | 9.34902726749692 | bayes_pls_golite062009 |
acetylcholine binding | 8.89748048814778 | bayes_pls_golite062009 |
acetylcholine receptor activity | 8.63094174477134 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 7.22265353460749 | bayes_pls_golite062009 |
amine binding | 7.07838074088669 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 6.7875346065164 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 6.75385972663331 | bayes_pls_golite062009 |
neurotransmitter binding | 6.11782125343012 | bayes_pls_golite062009 |
neurotransmitter receptor activity | 5.97698567435878 | bayes_pls_golite062009 |
chloride channel regulator activity | 5.57216711685731 | bayes_pls_golite062009 |
transmembrane receptor activity | 5.4080353535498 | bayes_pls_golite062009 |
receptor activity | 5.11329651194787 | bayes_pls_golite062009 |
transporter activity | 5.11262082564788 | bayes_pls_golite062009 |
transmembrane transporter activity | 5.03439798256257 | bayes_pls_golite062009 |
substrate-specific transporter activity | 4.91314874981447 | bayes_pls_golite062009 |
molecular transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
signal transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
G-protein coupled receptor activity | 3.09231388867595 | bayes_pls_golite062009 |
binding | 2.4916526322278 | bayes_pls_golite062009 |
GABA-A receptor activity | 2.01747858730155 | bayes_pls_golite062009 |
beta-amyloid binding | 1.6057916207188 | bayes_pls_golite062009 |
G-protein coupled amine receptor activity | 1.37431949258757 | bayes_pls_golite062009 |
serotonin binding | 1.33584589886834 | bayes_pls_golite062009 |
serotonin-activated cation-selective channel activity | 1.31324203158511 | bayes_pls_golite062009 |
1.15330735898282 | bayes_pls_golite062009 | |
channel regulator activity | 1.13923307634251 | bayes_pls_golite062009 |
toxin binding | 1.03329843925063 | bayes_pls_golite062009 |
drug binding | 0.64715018605883 | bayes_pls_golite062009 |
protein binding | 0.406954670483187 | bayes_pls_golite062009 |
serotonin receptor activity | 0.0879353619248899 | bayes_pls_golite062009 |