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View Structure Prediction Details

Protein: CE28447
Organism: Caenorhabditis elegans
Length: 133 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28447.

Description E-value Query
Range
Subject
Range
gi|125777326, gi... - gi|54639317|gb|EAL28719.1| GA14151-PA [Drosophila pseudoobscura], gi|125777326|ref|XP_001359570.1| G...
204.0 [0..1] [129..18]
gi|187029849, gi... - gi|39586262|emb|CAE66673.1| Hypothetical protein CBG12012 [Caenorhabditis briggsae], gi|187029849|em...
194.0 [0..1] [132..1]
CG9396-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9396 (CG9396, FBgn0037714). It is a protein...
186.0 [0..2] [127..20]
gi|7504062 - gi|7504062|pir||T25797 hypothetical protein F53F10.3 - Caenorhabditis elegans
178.0 [0..1] [123..1]
gi|47938856, gi|... - gi|47938856|gb|AAH71315.1| Brp44 protein [Danio rerio], gi|169154836|emb|CAQ13558.1| (novel protein,...
175.0 [0..1] [127..3]
gi|87619697 - gi|87619697|gb|ABD38642.1| hypothetical protein [Ictalurus punctatus]
172.0 [0..4] [128..6]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPHRLLYQA LCKAGDKFVY PVLPAFAKPA WNHAAGPKTV FFWAPTIKWT LIGAGLADLA  60
   61 RPADKLSLYQ NSALFATGAI WTRYCLVITP INYYLSSVNF FVMCTGLAQL CRIAHYRYQN 120
  121 PDWETKEIME THN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.455932
Match: PF03650.4
Description: No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.884 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle