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View Structure Prediction Details

Protein: CE29034
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29034.

Description E-value Query
Range
Subject
Range
gi|157745309 - gi|157745309|ref|XP_001667751.1| Hypothetical protein CBG22275 [Caenorhabditis briggsae AF16]
gi|187022135, gi... - gi|39589492|emb|CAE74521.1| Hypothetical protein CBG22275 [Caenorhabditis briggsae], gi|187022135|em...
586.0 [0..17] [477..19]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRRRVPAP PPQAPSVPAS IPRASGVTLS VHPIWPDIQF TQGELFFECT LFLYSVLALF  60
   61 LQYLNIYKTL WWLPKSYWHY SLKFHLINPY FLSCVGLLLG WRVTVCFWKT ITEVIATISA 120
  121 NQSQFIQSSL MIVEYAAIKT PVMTLIITSF LFSFNRVCHD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSRSVLWFL FPILFYAFIF RSEIIGWLGR FREQIGKWRR REIEFSDVCE RLSESPPAQI  60
   61 DLESVLHMCS DSPAQIREEI QVLIDDLVLR VKKSIFAGVS TAFLSIMLPC IFVPFKTSQG 120
  121 IP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKILINEVWE CQLAIVVGLT AFSLYVAYLS PLNYLDLLHR AAIHLGSWHQ IEGPRIGHTG  60
   61 SMSSAPTPWS EFCLYNDGET VQMPDGRCYR AKSSNSIRTV AAHPESSRHN TFFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [397-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLRKPNNLIN IMCSFEFLLI FIQFWMLVLT NDWQHIVTFV LLMFANYLLF AKLFKDKIIL  60
   61 SRIYEPSQED LLLMHQLQQE R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle